Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28p20
(284 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC015462-1|AAH15462.1| 106|Homo sapiens mitochondrial ribosomal... 64 6e-11
AF151897-1|AAD34134.1| 106|Homo sapiens CGI-139 protein protein. 64 6e-11
AC006006-2|AAD43190.1| 106|Homo sapiens unknown protein. 64 6e-11
BC105793-1|AAI05794.1| 112|Homo sapiens MRPS33 protein protein. 63 2e-10
BC067101-1|AAH67101.1| 1212|Homo sapiens MYOM3 protein protein. 29 3.6
AL591178-3|CAH72090.1| 1437|Homo sapiens myomesin family, member... 29 3.6
BC101474-1|AAI01475.1| 1249|Homo sapiens BRCA1 interacting prote... 28 4.8
BC101472-1|AAI01473.1| 1249|Homo sapiens BRCA1 interacting prote... 28 4.8
AF360549-1|AAK38111.1| 1249|Homo sapiens BRCA1-binding helicase-... 28 4.8
BC069806-1|AAH69806.1| 233|Homo sapiens hypothetical protein LO... 28 6.3
BC069770-1|AAH69770.1| 233|Homo sapiens coiled-coil domain cont... 28 6.3
BC069748-1|AAH69748.1| 233|Homo sapiens coiled-coil domain cont... 28 6.3
BC069691-1|AAH69691.1| 233|Homo sapiens coiled-coil domain cont... 28 6.3
AL162377-3|CAI13430.1| 233|Homo sapiens coiled-coil domain cont... 28 6.3
AK098719-1|BAC05391.1| 233|Homo sapiens protein ( Homo sapiens ... 28 6.3
>BC015462-1|AAH15462.1| 106|Homo sapiens mitochondrial ribosomal
protein S33 protein.
Length = 106
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +3
Query: 3 FSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 173
FS PL +E +YP H +LM LR GL+RDEHQDF +E KRL++LRGK K
Sbjct: 37 FSELPLAKKKETYDWYPNHHTYAELMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKEK 93
>AF151897-1|AAD34134.1| 106|Homo sapiens CGI-139 protein protein.
Length = 106
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +3
Query: 3 FSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 173
FS PL +E +YP H +LM LR GL+RDEHQDF +E KRL++LRGK K
Sbjct: 37 FSELPLAKKKETYDWYPNHHTYAELMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKEK 93
>AC006006-2|AAD43190.1| 106|Homo sapiens unknown protein.
Length = 106
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +3
Query: 3 FSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 173
FS PL +E +YP H +LM LR GL+RDEHQDF +E KRL++LRGK K
Sbjct: 37 FSELPLAKKKETYDWYPNHHTYAELMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKEK 93
>BC105793-1|AAI05794.1| 112|Homo sapiens MRPS33 protein protein.
Length = 112
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/57 (50%), Positives = 37/57 (64%)
Frame = +3
Query: 3 FSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 173
FS PL +E +YP H +LM LR GL+RDEHQDF +E KRL++LRG+ K
Sbjct: 37 FSELPLAKKKETYDWYPNHHTYAELMQTLRFLGLYRDEHQDFMDEQKRLKKLRGEEK 93
>BC067101-1|AAH67101.1| 1212|Homo sapiens MYOM3 protein protein.
Length = 1212
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 60 METHKLMMNLRDYGLFRDEHQDFKEEMKRLREL 158
++TH+L+ RD+ R ++ +E K LREL
Sbjct: 116 LQTHRLLRQRRDWKTLRRRTEEKVQEAKELREL 148
>AL591178-3|CAH72090.1| 1437|Homo sapiens myomesin family, member 3
protein.
Length = 1437
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 60 METHKLMMNLRDYGLFRDEHQDFKEEMKRLREL 158
++TH+L+ RD+ R ++ +E K LREL
Sbjct: 116 LQTHRLLRQRRDWKTLRRRTEEKVQEAKELREL 148
>BC101474-1|AAI01475.1| 1249|Homo sapiens BRCA1 interacting protein
C-terminal helicase 1 protein.
Length = 1249
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 102 LFRDEHQDFKEEMKRLRELRGKVKVWRR 185
++RDE+ DF+ E KR+R L ++ +R
Sbjct: 146 IYRDENDDFQVEKKRIRPLETTQQIRKR 173
>BC101472-1|AAI01473.1| 1249|Homo sapiens BRCA1 interacting protein
C-terminal helicase 1 protein.
Length = 1249
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 102 LFRDEHQDFKEEMKRLRELRGKVKVWRR 185
++RDE+ DF+ E KR+R L ++ +R
Sbjct: 146 IYRDENDDFQVEKKRIRPLETTQQIRKR 173
>AF360549-1|AAK38111.1| 1249|Homo sapiens BRCA1-binding
helicase-like protein BACH1 protein.
Length = 1249
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 102 LFRDEHQDFKEEMKRLRELRGKVKVWRR 185
++RDE+ DF+ E KR+R L ++ +R
Sbjct: 146 IYRDENDDFQVEKKRIRPLETTQQIRKR 173
>BC069806-1|AAH69806.1| 233|Homo sapiens hypothetical protein
LOC83446 protein.
Length = 233
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +3
Query: 72 KLMMNLRDYGLFRDEHQDFKEEMKRLRE----LRGKVKVWR 182
KLM L++ FR+E + F+E+++ RE RGK+ +R
Sbjct: 40 KLMHKLQEEKAFREEMKIFREKIEDFREEMWTFRGKIHAFR 80
>BC069770-1|AAH69770.1| 233|Homo sapiens coiled-coil domain
containing 70 protein.
Length = 233
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +3
Query: 72 KLMMNLRDYGLFRDEHQDFKEEMKRLRE----LRGKVKVWR 182
KLM L++ FR+E + F+E+++ RE RGK+ +R
Sbjct: 40 KLMHKLQEEKAFREEMKIFREKIEDFREEMWTFRGKIHAFR 80
>BC069748-1|AAH69748.1| 233|Homo sapiens coiled-coil domain
containing 70 protein.
Length = 233
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +3
Query: 72 KLMMNLRDYGLFRDEHQDFKEEMKRLRE----LRGKVKVWR 182
KLM L++ FR+E + F+E+++ RE RGK+ +R
Sbjct: 40 KLMHKLQEEKAFREEMKIFREKIEDFREEMWTFRGKIHAFR 80
>BC069691-1|AAH69691.1| 233|Homo sapiens coiled-coil domain
containing 70 protein.
Length = 233
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +3
Query: 72 KLMMNLRDYGLFRDEHQDFKEEMKRLRE----LRGKVKVWR 182
KLM L++ FR+E + F+E+++ RE RGK+ +R
Sbjct: 40 KLMHKLQEEKAFREEMKIFREKIEDFREEMWTFRGKIHAFR 80
>AL162377-3|CAI13430.1| 233|Homo sapiens coiled-coil domain
containing 70 protein.
Length = 233
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +3
Query: 72 KLMMNLRDYGLFRDEHQDFKEEMKRLRE----LRGKVKVWR 182
KLM L++ FR+E + F+E+++ RE RGK+ +R
Sbjct: 40 KLMHKLQEEKAFREEMKIFREKIEDFREEMWTFRGKIHAFR 80
>AK098719-1|BAC05391.1| 233|Homo sapiens protein ( Homo sapiens
cDNA FLJ25853 fis, clone TST09463. ).
Length = 233
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +3
Query: 72 KLMMNLRDYGLFRDEHQDFKEEMKRLRE----LRGKVKVWR 182
KLM L++ FR+E + F+E+++ RE RGK+ +R
Sbjct: 40 KLMHKLQEEKAFREEMKIFREKIEDFREEMWTFRGKIHAFR 80
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,947,165
Number of Sequences: 237096
Number of extensions: 523194
Number of successful extensions: 1193
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 76,859,062
effective HSP length: 71
effective length of database: 60,025,246
effective search space used: 1380580658
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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