Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28p20
         (284 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   3.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   5.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   9.0  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 261 DFYLHINYTKHTTQL 217
           D+YL +  T HT QL
Sbjct: 289 DYYLVLENTDHTKQL 303


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 169 SRFGGGCLI 195
           +RFGG CLI
Sbjct: 428 ARFGGSCLI 436


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 169 SRFGGGCLI 195
           +RFGG CLI
Sbjct: 428 ARFGGSCLI 436


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 185 PPPNLDF 165
           PPPNLD+
Sbjct: 322 PPPNLDY 328


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 6    SARPLHTNEEIIHYYPRH 59
            SA  LH N  ++H +  H
Sbjct: 1726 SAAGLHPNNTLLHSFMYH 1743


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 6    SARPLHTNEEIIHYYPRH 59
            SA  LH N  ++H +  H
Sbjct: 1722 SAAGLHPNNTLLHSFMYH 1739


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,941
Number of Sequences: 438
Number of extensions: 1128
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)