Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28p11
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    30   0.24 
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    27   2.3  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   3.0  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   4.0  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 277 SKNVSQ-EEWLTLKHNSTILPPPY 209
           S+N+   ++W TL+HN  I  PPY
Sbjct: 186 SENIDDTQKWTTLEHNGVIFAPPY 209


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 247 SAILLEKHSSRVACAASIVASCDMLLNPSIPTPELMSVQKLAGS*LLK 390
           S  + + H+SRVA   S+  +    L+  IPT +L+   K+  S LL+
Sbjct: 303 SEFIKDNHTSRVAILISMKLAFQYQLSQVIPTLKLLLQSKVYDSVLLE 350


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 259 LEKHSSRVACAASIVAS-CDMLLNPSIPTPELMSVQKLAGS 378
           L++   R+     ++A  C+   NP + +P+L+ ++KLA S
Sbjct: 355 LDEFEKRLESGEKVMALFCEFPSNPLLNSPDLVRIRKLADS 395


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 303 YNRSSTSYSRRMFLKKNG*P*STTQQYCPHHTG 205
           + +S +S SR   L  +      T+ YCPH TG
Sbjct: 284 FRKSESSPSRSSVLSTSKPEVHETEGYCPHKTG 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,132
Number of Sequences: 5004
Number of extensions: 27972
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)