Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28p11
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313...    29   1.7  
10_08_0963 + 21904735-21904818,21904922-21905260                       29   3.0  

>08_01_0356 +
           3131214-3132443,3132584-3132778,3132892-3132972,
           3133324-3133383,3133466-3133560,3133660-3133816,
           3133896-3134021,3134398-3134478,3134557-3134647,
           3134735-3134868,3135068-3135136,3135219-3135308,
           3135405-3135508,3135594-3135762,3136066-3136134
          Length = 916

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 259 EEWLTLKHNSTILPPPYR 206
           ++W TL H+  I PPPY+
Sbjct: 372 QKWTTLVHSGVIFPPPYK 389


>10_08_0963 + 21904735-21904818,21904922-21905260
          Length = 140

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 377 LPASFCTLISSGVGIEGLSN-MSQLATIEAAQATLEECFSRRMADLEAQLNNTAP 216
           L ++  T++  GVG + ++N M Q+A   A   TLE  F +  +++  +LN   P
Sbjct: 74  LASAAATVVVGGVGADNVTNYMGQMAIAMAMLTTLEN-FLKLRSNINGELNCLLP 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,463,867
Number of Sequences: 37544
Number of extensions: 165744
Number of successful extensions: 351
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)