Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28p08
         (458 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     27   0.11 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    27   0.11 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           27   0.11 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   2.4  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   7.3  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   7.3  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +3

Query: 9   KKTGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKV 146
           ++TG   +  +  +VHV+   +  F PG +P+  +T +T   I+++
Sbjct: 203 EETGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQRTAYTRHQILEL 248


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +3

Query: 9   KKTGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKV 146
           ++TG   +  +  +VHV+   +  F PG +P+  +T +T   I+++
Sbjct: 203 EETGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQRTAYTRHQILEL 248


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +3

Query: 9   KKTGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKV 146
           ++TG   +  +  +VHV+   +  F PG +P+  +T +T   I+++
Sbjct: 203 EETGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQRTAYTRHQILEL 248


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 290 NGASHQHRLKTDAPTQNAF 234
           +GA+H   +K+D+ T NA+
Sbjct: 171 SGATHHGGIKSDSVTSNAW 189


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 450 FICHTFYLYSYDYKTQYTDY 391
           F+C  FY Y +     YT Y
Sbjct: 79  FLCLPFYSYFFYLSYIYTTY 98


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 450 FICHTFYLYSYDYKTQYTDY 391
           F+C  FY Y +     YT Y
Sbjct: 35  FLCLPFYSYFFYLSYIYTTY 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,774
Number of Sequences: 336
Number of extensions: 2233
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)