Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28p08
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.0  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   1.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   1.8  
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   4.2  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   4.2  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   5.6  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   7.3  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    24   9.7  

>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 143 LYNEAVGVYSLKRSRLTAWMKF---KRVPIGHVYLCKIM 36
           L NEA+ +YS  ++ +  WM F   ++ PI H+   K +
Sbjct: 133 LNNEALKLYSCAKAGICRWMAFHFLEQEPIDHINFTKFL 171


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 129 GLIIKVLILCDECCKKELRDYIKGENSFNVAFKNCESILCRR 254
           G+ + VL L         RDY+   N  +V+ K+C SIL R+
Sbjct: 145 GINVSVLTLNSNFYVPVYRDYLMALNINSVSKKSCVSILSRK 186


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 247  HKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINT 143
            HKML + L+ +  E   ++ S+  +L + SH+I T
Sbjct: 973  HKMLEEKLQESNIEAQRIVRSKMQYLSNMSHEIRT 1007


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 186 DYIKGENSFNVAFKNCESILCRRISFQTVLMTCAVLLLLF 305
           +++  EN+F +A +N   I C  I F   + + ++L+  F
Sbjct: 91  NFLPFENTFEMALRNDFQIFCTSILFTCYIQSFSLLISNF 130


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +3

Query: 372  HNNYI-ISNPCIEFCNHKSTNKKYD 443
            HNN I ++ P      HK  NKKYD
Sbjct: 1110 HNNLIAVTPPSRTGVEHKEENKKYD 1134


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 250  RHKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINTFIMRPSV 122
            ++ + +Q  K  L  F P++  ++S L H  H     +  PSV
Sbjct: 938  KYYLENQLSKPLLRIFEPILGEKASSLLHGDHTRTISMAAPSV 980


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 66  GYSFEFHPGSQPRTFQTIHTDGLIIKVLILCDE 164
           G S +  PGSQP +F   H   L  K   +C++
Sbjct: 35  GTSPDTFPGSQPVSFSKKHLQALKEKNYFVCEK 67


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 131 AVGVYSLKRSRLTAWMKFKRVPIGHVYLCKIM 36
           A GV+ +K  +L  W     +  G  +LC I+
Sbjct: 205 AYGVFHIKGGKLQGWQYLFLIEGGVTFLCAIV 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,051
Number of Sequences: 5004
Number of extensions: 32814
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)