Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28p08
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical ...    29   2.1  
AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical...    28   2.8  

>AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical
           protein C07F11.2 protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 204 NSFNVAFKNCESILCRRISFQTVLMTCAVLLLLFNVEKFSM 326
           N   V  + CE  LC  ++ +  + TC +L LLFN   F++
Sbjct: 364 NDLPVLKRACERYLCSELNSKKDIGTCLLLDLLFNSIVFNL 404


>AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical
           protein Y39B6A.27 protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +3

Query: 18  GASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKVLILC--DECCKKELRDY 191
           GA  +  Y   VH S  +     P SQP +    H+  LI  +   C   +CC   +R  
Sbjct: 323 GALAVCIYCCLVHASTPFEAPMRPTSQP-SLLISHSYPLIFIISFFCGMSDCCINSVRSV 381

Query: 192 I 194
           I
Sbjct: 382 I 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,960,874
Number of Sequences: 27780
Number of extensions: 190183
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)