Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28p06
         (202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   1.4  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    23   4.2  
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    23   7.3  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   7.3  

>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 202 NASSEAXDPSSTDSLETSHSFCICASSSFIVNYI 101
           ++S+ A   SS+ S  +S SF   ASSSFI + +
Sbjct: 51  SSSATAISSSSSSSPLSSSSFTSPASSSFITSLV 84


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 163 SLETSHSFCICASSSFI 113
           S+  SH F +CA SSF+
Sbjct: 628 SMFHSHKFILCARSSFL 644


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 107 IYNEARRGADAK 142
           I+NEARR ADAK
Sbjct: 213 IHNEARRLADAK 224


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -1

Query: 181 DPSSTDSLETSHSFCI---CASSSFIV 110
           DPS T S+E   S C+     +SSF++
Sbjct: 93  DPSGTSSIEKVSSICLKNDIQTSSFVL 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,260
Number of Sequences: 5004
Number of extensions: 4695
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)