Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28p06
         (202 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72...    26   4.8  

>02_01_0099 +
           726576-727105,727899-728048,728510-728635,728726-729714,
           729776-729818,730101-730218,730743-730853
          Length = 688

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 10  LITLIKSLLIFKVNLDYYFFFSC 78
           ++ LIK+L+   +  D YFFFSC
Sbjct: 577 VVDLIKALVKSDLLKDTYFFFSC 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,177
Number of Sequences: 37544
Number of extensions: 24001
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)