Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28o23
         (645 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-7|CAJ14158.1|  284|Anopheles gambiae signal sequence re...    23   6.3  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   8.3  

>CR954257-7|CAJ14158.1|  284|Anopheles gambiae signal sequence
           receptor protein.
          Length = 284

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 270 LQSTSRCSRKTC*VFTARLFASGSRPIYACGYP 368
           L++T      T  +FT  L ASGS+     GYP
Sbjct: 59  LETTKSPDADTYLLFTRPLHASGSQLELPAGYP 91


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 361 PHA*IGLDPLANSLAVKTQQVFREHL 284
           PH  +G DPL++ L    ++ F + +
Sbjct: 184 PHELVGTDPLSSPLQAAPREPFTDRI 209


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 679,697
Number of Sequences: 2352
Number of extensions: 12879
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63559560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)