Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28o18
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379... 30 1.3
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458... 29 2.2
01_05_0457 + 22423998-22424039,22424139-22424415,22424540-224246... 29 2.2
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 29 3.9
04_01_0256 + 3402982-3402984,3403077-3403158,3403307-3403449,340... 29 3.9
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 29 3.9
05_02_0083 + 6450694-6450766,6451391-6451560,6451633-6451704,645... 28 5.1
03_06_0002 + 30917082-30917146,30917594-30917975,30918083-309182... 28 5.1
01_05_0633 + 23840427-23840562,23840699-23840768,23840846-238409... 28 5.1
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 27 8.9
02_02_0677 + 12859101-12859413,12862450-12862817 27 8.9
>10_08_0568 + 18837195-18837203,18837694-18837741,18837853-18837912,
18837986-18838155,18838297-18838369,18838529-18838594,
18838685-18838768,18838950-18839027,18839122-18839205,
18839562-18839641,18839791-18839848,18839933-18840235,
18840361-18840531,18840972-18841204,18841303-18841705,
18841961-18842212,18842293-18842790,18843073-18843170,
18843314-18843413,18843653-18843798,18843912-18844068
Length = 1056
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +2
Query: 209 ALNTSIPTESFKAKIDATAACHDLYSQIRTGHSERENVIKNCILATAESVKKLKAVKEEK 388
ALNT E + K D HD SQ RE ++ E +KK+ A+ EE
Sbjct: 986 ALNTEAEREKLRKKRDEIQKQHDTLSQKMNASGYREKAPQS---KQDEDMKKIAALLEE- 1041
Query: 389 PNDLEVLRNLKAE 427
LE++R ++E
Sbjct: 1042 ---LEIIREAESE 1051
>01_06_0840 +
32343700-32344138,32345329-32345419,32345584-32345866,
32346023-32346097,32346470-32346514,32346889-32346979,
32347060-32347118,32347621-32347704,32348109-32348168,
32348585-32348637,32348724-32348757,32349334-32350335,
32350477-32351035,32351873-32352372,32352793-32353200
Length = 1260
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 140 CPDFLEFQDILKKMRILDDKIVYALNTSIPTESFKAKIDATAACHDL 280
C L DILKK+ +L KIV + +P S+K I +T H +
Sbjct: 252 CRPALRKPDILKKVEMLASKIVQD-RSKLPISSYKDAISSTLENHQV 297
>01_05_0457 +
22423998-22424039,22424139-22424415,22424540-22424622,
22425378-22425437,22425610-22425718,22425805-22425857,
22425953-22426033,22426125-22426237,22426421-22426475
Length = 290
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 173 KKMRILD-DKIVYALNTSIPTESFKAKIDATAACHDLYSQIRTGHSERENVIKNCILATA 349
KK +++ D+ ++AL+ P + KI+ +DL +TG ERE V++ I +
Sbjct: 162 KKNGVIEFDEFIHALSVFHPLAPLEDKINFAFRLYDLR---QTGFIEREEVMQMVIAILS 218
Query: 350 ESVKKL 367
ES KL
Sbjct: 219 ESDMKL 224
>08_02_1426 + 27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +2
Query: 191 DDKIVYALNTSIPTESFKAKIDATAAC--HDLYSQIRTGHSERENVIKNCILATAESVKK 364
+++ LN S+ +S T C HDL +I SE EN++ ++ S+
Sbjct: 993 EEQFTALLNKSMIQQSRTVTTGKTGFCQVHDLMREISIAKSEEENLV---LVLDEHSISS 1049
Query: 365 LKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEV 475
K +K L + ++ EQKK +Q + V +
Sbjct: 1050 SK----DKVRHLVISQSWSREQKKNNDMQNIVDVSHI 1082
>04_01_0256 +
3402982-3402984,3403077-3403158,3403307-3403449,
3403557-3403832,3404136-3404315
Length = 227
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = +2
Query: 230 TESFKAKIDATAACHDLYSQIRTGHS--ERENVIKNCILATAESVKK-LKAVKEEKPNDL 400
+ S K ++ T LY +++ S + E+VI + + E KK L+ +K +K DL
Sbjct: 42 SSSLKVEVRGTVDVGKLYERLKKMASSVKIESVIPDDVKEEIERYKKDLERMKRQK-EDL 100
Query: 401 EVLRNLKAEQKKLRLLQTELSVEEVIQEK 487
++ K E+KK +LQ + + E Q++
Sbjct: 101 DIKLREKREEKK--VLQADKTAAEEEQKR 127
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 308 ERENVIKNCILATAESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEV--IQ 481
+RE +++ + ESVK ++ + E + L LR E + + + L ++EV Q
Sbjct: 189 DRERALQDQLRQATESVKNMQKLHESAQSQLFELRTQSEEDRAAKETEVNLLLDEVERAQ 248
Query: 482 EKTTKLFTEK 511
+ L EK
Sbjct: 249 ARLVSLEREK 258
>05_02_0083 +
6450694-6450766,6451391-6451560,6451633-6451704,
6451893-6452043,6452709-6452817,6452906-6453023,
6453214-6453361,6453520-6453768,6454209-6454334,
6454474-6454574,6454728-6454802,6455160-6455219
Length = 483
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 350 ESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEK 487
E++K + VK PND + R LK +K ++ ++ E ++ +EK
Sbjct: 98 EALKDFQQVKRISPNDPDATRKLKECEKAVQKIRFEEAISVGDEEK 143
>03_06_0002 +
30917082-30917146,30917594-30917975,30918083-30918279,
30918372-30918513,30919287-30919415,30919460-30919471
Length = 308
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 323 IKNCILATAESVKKLKAVKEEKPNDLEVLRNLKAE 427
+ +C+ +++K V + KP +EV+R L AE
Sbjct: 246 VTSCVTTPIDTIKTRLQVNQNKPKAMEVVRRLIAE 280
>01_05_0633 +
23840427-23840562,23840699-23840768,23840846-23840951,
23841086-23841184,23841320-23841442,23841555-23842691
Length = 556
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 410 RNLKAEQKKLRLLQTELSVEEVIQEKTT 493
+N +KK+RLL +LS++ V +E TT
Sbjct: 198 KNCDGSRKKMRLLSQKLSLKSVPEENTT 225
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 302 HSERENVIKNCILATAESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELS--VEEV 475
H+ +EN K+ + AES+ L + + ++ + KA L+ LQ +LS ++
Sbjct: 640 HAFQENANKSWLQRNAESMGLLLETSDSEEERVQGHKQRKATSANLQKLQQDLSELLQRP 699
Query: 476 IQEKT 490
+Q KT
Sbjct: 700 LQPKT 704
>02_02_0677 + 12859101-12859413,12862450-12862817
Length = 226
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 242 KAKIDATAACHDLYSQIRTGHSERENVIKNCILATAESVKKLKAVKEEKPNDLEV 406
K ++A + + + + G SE + I A E +KKLK +EK ++ V
Sbjct: 128 KKNVEAVTKHNKMLEEAKHGRSEETKKYQEEIGALNEDMKKLKLQVQEKTEEVHV 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,473,957
Number of Sequences: 37544
Number of extensions: 149489
Number of successful extensions: 463
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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