Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28o18
(616 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 29 0.036
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 29 0.036
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 5.5
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 22 5.5
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 22 5.5
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 22 5.5
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 22 5.5
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 5.5
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 5.5
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 5.5
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 5.5
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 5.5
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 5.5
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 7.2
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 7.2
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 21 9.6
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 21 9.6
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 21 9.6
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 21 9.6
DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex det... 21 9.6
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 21 9.6
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 21 9.6
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 9.6
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 29.1 bits (62), Expect = 0.036
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +2
Query: 161 QDILKKMRILDDKIVYALNTSIPTESFKAKIDATAACHDLYS 286
+++LK+ +I+ ++I L+ SI +S ++D + C DL S
Sbjct: 437 EEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLAS 478
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 29.1 bits (62), Expect = 0.036
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +2
Query: 161 QDILKKMRILDDKIVYALNTSIPTESFKAKIDATAACHDLYS 286
+++LK+ +I+ ++I L+ SI +S ++D + C DL S
Sbjct: 143 EEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLAS 184
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 87 NVNSNMYFDSVNQYLFPNNF 28
++NS Y D V + +FP +F
Sbjct: 461 HINSVSYIDKVARIVFPASF 480
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 609 SKNY*FNVYNNN 574
S NY +N YNNN
Sbjct: 86 SNNYNYNNYNNN 97
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 609 SKNY*FNVYNNN 574
S NY +N YNNN
Sbjct: 86 SNNYNYNNYNNN 97
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 609 SKNY*FNVYNNN 574
S NY +N YNNN
Sbjct: 86 SNNYNYNNYNNN 97
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 609 SKNY*FNVYNNN 574
S NY +N YNNN
Sbjct: 86 SNNYNYNNYNNN 97
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 609 SKNY*FNVYNNN 574
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 609 SKNY*FNVYNNN 574
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 609 SKNY*FNVYNNN 574
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 609 SKNY*FNVYNNN 574
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 609 SKNY*FNVYNNN 574
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 609 SKNY*FNVYNNN 574
S NY +N YNNN
Sbjct: 308 SNNYNYNNYNNN 319
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 7.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 612 TSKNY*FNVYNNNSGKGKTSFSL 544
+S NY + YNNN K +++
Sbjct: 305 SSNNYNYKNYNNNYNSKKLYYNI 327
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 612 TSKNY*FNVYNNNSGKGKTSFSL 544
+S NY + YNNN K +++
Sbjct: 316 SSNNYNYKNYNNNYNSKKLYYNI 338
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGK 565
S NY ++ YNNN+ K
Sbjct: 86 SNNYNYSNYNNNNYK 100
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGK 565
S NY ++ YNNN+ K
Sbjct: 86 SNNYNYSNYNNNNYK 100
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGK 565
S NY ++ YNNN+ K
Sbjct: 86 SNNYNYSNYNNNNYK 100
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGK 565
S NY ++ YNNN+ K
Sbjct: 86 SNNYNYSNYNNNNYK 100
>DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGK 565
S NY ++ YNNN+ K
Sbjct: 86 SNNYNYSNYNNNNYK 100
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGK 565
S NY ++ YNNN+ K
Sbjct: 86 SNNYNYSNYNNNNYK 100
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 526
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 526
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 526
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 526
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 526
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 526
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 609 SKNY*FNVYNNNSGKGKTSFSLHKYQGL 526
S NY ++ YNN + T++ +Y +
Sbjct: 86 SNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 21.0 bits (42), Expect = 9.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 224 LTYLRHILFYHQVSSSSSGCPEILKNP 144
LT + I+F + + + C I+KNP
Sbjct: 43 LTIIYMIIFVTGIFGNITTCTVIIKNP 69
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 582 NNNSGKGKTSFS 547
NNNSG G T+ S
Sbjct: 539 NNNSGNGNTNSS 550
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,529
Number of Sequences: 438
Number of extensions: 2376
Number of successful extensions: 30
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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