Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28o17
         (290 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    27   0.56 
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   1.7  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    24   3.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   5.2  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    24   5.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    23   9.1  

>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 285 FLXNDKVIYLQNSNKNKLFELSGL 214
           FL   +V+YL ++NK + FELS +
Sbjct: 374 FLQQSRVLYLFHANKQRHFELSDI 397


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 183 TVESQTRAGDEIASFLRYC 127
           T+E   +AG +I SFL YC
Sbjct: 136 TIEEVHKAGGKIKSFLSYC 154


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 243 KNKLFELSGLSLKSCRHDFVTVESQTRAGDEIASF 139
           KNKL + S + L SC    +   S TR   + +S+
Sbjct: 78  KNKLSKESAIQLSSCIRKTLLAPSSTRVPSKNSSY 112


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 137  FATVGCVECLAVNSSVLXNFGGSS 66
            F +  C E    +SS++  FGGS+
Sbjct: 1190 FCSRSCAERYPTDSSIMREFGGSA 1213


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 143 RSFATVGCVECLAVNSSVLXNFGGSSMXGSWI 48
           +SF ++G    +A +     N GG  M  SWI
Sbjct: 56  QSFGSMGLCPAMAGSLIFSMNCGGGGMVWSWI 87


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 154 RNRFVPSLLSDVWNVWLLIVACSVT 80
           +N   P  L   W ++L++  C++T
Sbjct: 824 KNDNFPEFLLVQWKLYLIVACCTIT 848


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 985,017
Number of Sequences: 5004
Number of extensions: 15102
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)