Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28o17
(290 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0394 - 17261008-17262476,17262554-17262743 29 0.83
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 28 1.1
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 28 1.4
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 3.3
09_06_0234 - 21747724-21747839,21748027-21748096,21749157-217492... 26 4.4
07_01_1179 + 11184521-11184536,11184593-11184691,11184790-111848... 26 5.8
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115... 26 5.8
04_04_1356 + 32854585-32854832,32854948-32855148,32855270-328554... 26 5.8
>09_04_0394 - 17261008-17262476,17262554-17262743
Length = 552
Score = 28.7 bits (61), Expect = 0.83
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 175 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 89
KP RR +PS S VW V LL+V C
Sbjct: 4 KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 78 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 170
+++EH T S+ HT S+ ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 161 QATKSLRSFATVGCVECLAVNSSVLXNFGGSSMXGSWIXXMCEVYPGGVC 12
Q K L + V C L V+ F +++ GSW + +Y G VC
Sbjct: 145 QVNKFLGTLQDVSCGRDLKNFLLVIAGFFAAAIIGSWCNLLTVIYIGFVC 194
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 137 FATVGCVECLAVNSSVLXNFGGSSMXGSW 51
FATV E + + + NFG SS+ GSW
Sbjct: 32 FATVSPQEISGSSPAEVQNFGLSSVQGSW 60
>09_06_0234 -
21747724-21747839,21748027-21748096,21749157-21749294,
21749389-21749493,21750157-21750527,21750612-21750694,
21750803-21751063,21751425-21751606,21752539-21752649,
21752727-21752798,21752883-21753036,21753329-21753341,
21754015-21754084,21754409-21754485,21754582-21754640,
21755327-21755580
Length = 711
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 67 DEPPKLXSTLLLTARHSTHPTVAKERSDFVACPRLAF 177
D PKL LLT R+ST VA + F++ L F
Sbjct: 317 DLEPKLIVVSLLTVRNSTDENVASVKEGFLSGLALHF 353
>07_01_1179 +
11184521-11184536,11184593-11184691,11184790-11184852,
11185011-11185084,11185187-11185261,11185371-11185514,
11185629-11185733,11185839-11186276,11187102-11188241,
11188320-11188493
Length = 775
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 112 HSTHPTVAKERSDFVACPRLAFDCYKIVSARF*TKP 219
HS T K + + R+ F CYK V A TKP
Sbjct: 281 HSARTTSKKRNREVI---RVTFKCYKYVKADCNTKP 313
>05_01_0167 -
1153778-1153927,1154006-1154797,1155602-1156408,
1156514-1156618,1156985-1157059,1157160-1157233,
1157388-1157450,1157549-1157647,1157704-1157811,
1157908-1157973,1158073-1158150,1158257-1158304,
1158381-1158440,1158527-1158610,1158902-1158949,
1159049-1159096,1161462-1161579
Length = 940
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 112 HSTHPTVAKERSDFVACPRLAFDCYKIVSARF*TKP 219
HS T K + + R+ F CYK V A TKP
Sbjct: 447 HSARTTSKKRNREVI---RVTFKCYKYVKADCNTKP 479
>04_04_1356 +
32854585-32854832,32854948-32855148,32855270-32855447,
32856389-32856651,32856800-32857040,32857317-32858456,
32858856-32858993
Length = 802
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 58 PXIDEPPKLXSTLLLTARHSTHPTVAKERSDFVA-CPRLAFDCYK 189
P +DEPP S +L H V + DF+ C A D K
Sbjct: 639 PVVDEPPFSDSPVLFGLVLRAHLLVLLRKKDFIPNCSASALDASK 683
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,487,981
Number of Sequences: 37544
Number of extensions: 101372
Number of successful extensions: 294
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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