Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28o17
         (290 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    28   0.97 
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    28   0.97 
Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical pr...    26   5.2  
AF016416-7|AAB65272.2|  307|Caenorhabditis elegans Hypothetical ...    26   5.2  
U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical pr...    25   6.8  
U97002-1|AAY86260.1|  181|Caenorhabditis elegans Hypothetical pr...    25   9.1  

>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
           protein F46F11.9b protein.
          Length = 1282

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 115 STHPTVAKERSDFVACPRLAFDCYKIVSARF 207
           S H  +A  R    A P L+FDCY++    F
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 546


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
           protein F46F11.9a protein.
          Length = 1280

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 115 STHPTVAKERSDFVACPRLAFDCYKIVSARF 207
           S H  +A  R    A P L+FDCY++    F
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 544


>Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical
           protein C09H10.7 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 196 TRFCNSRKPNEGRRRNRFVPSLLSDVWNVWLLIVACSVTS 77
           T F +S  PN   R   F P+L S   NV   +++  + S
Sbjct: 246 TMFASSLAPNSAGRTTHFDPTLNSPAENVLSEVISSEIDS 285


>AF016416-7|AAB65272.2|  307|Caenorhabditis elegans Hypothetical
           protein F29A7.2 protein.
          Length = 307

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 108 QTFHTSDSSEGTKRFRRLPSFGFRLLQNRVCKILN 212
           ++  TSDS  G KR      FGFR   + + ++ N
Sbjct: 78  ESVQTSDSEHGIKRVWLKEGFGFRDWIDHILEVFN 112


>U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical
           protein C49H3.3 protein.
          Length = 109

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 30  DLAHTXDPGAXH*RAAEVTEHATINSQTFHTSDSS 134
           D   T   G  +    EVT  ATIN++T    D S
Sbjct: 43  DAEKTKTDGTANEEKMEVTSQATINTKTLKKKDGS 77


>U97002-1|AAY86260.1|  181|Caenorhabditis elegans Hypothetical
           protein K09H11.9 protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 195 HDFVTVESQTRAGDEIASFLR 133
           H FV  ESQ    +++ASFLR
Sbjct: 126 HKFVQPESQDYLAEQMASFLR 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,553,596
Number of Sequences: 27780
Number of extensions: 88413
Number of successful extensions: 235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)