Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28o08
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              252   2e-67
SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)                 29   2.6  
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          29   4.5  
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)                      28   5.9  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   28   5.9  
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  252 bits (617), Expect = 2e-67
 Identities = 120/198 (60%), Positives = 142/198 (71%)
 Frame = +3

Query: 27  RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 206
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 207 HSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDR 386
           HSRARVRK  EAR KGRH G GKR+GTANARMPQK +W                AKKID 
Sbjct: 86  HSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDN 145

Query: 387 HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXX 566
           H+YHSLYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQ                   
Sbjct: 146 HMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRM 205

Query: 567 XXXXXXLLQTFAREDEAA 620
                 +L  +A+E+EAA
Sbjct: 206 EQKRKDMLSAYAKEEEAA 223


>SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)
          Length = 352

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = -2

Query: 302 HTRIGSTSSLTKATVTTLST----CLCVFADTGAGVDCYRFLDDETILDHLTD-VLSGVG 138
           +T +G  S+    T+T LS     CL +    G        +  +  L   T+ +L+ + 
Sbjct: 5   NTSVGYNSTSAGFTITDLSLLPAYCLAISVGLGGNGLVIGVVRKKRSLHTTTNYLLANLA 64

Query: 137 VCDLIDFIWIQPHLLFT-TSHNRG 69
           + DL++ IW  P L+ T   H RG
Sbjct: 65  LADLLNLIWCIPGLVLTFVEHPRG 88


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 213 RARVRKNTEARRKGRHCGFGKRRGTANAR 299
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 342 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 220
           ++ + F+P    V +    W++  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 342 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 220
           ++ + F+P    V +    W++  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
          Length = 248

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -2

Query: 584 FLLLGGNTFLAALAC 540
           F L+GG TFLAALAC
Sbjct: 70  FALMGGLTFLAALAC 84


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 568 PPRRRNCCRPSLEKTKPRLPLRSK 639
           PP  +N  +P ++KTKP  PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222


>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 390 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 289
           D  + S Q C     FLEP  VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,898,434
Number of Sequences: 59808
Number of extensions: 454698
Number of successful extensions: 1327
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)