Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28o03
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 104 5e-23
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 33 0.23
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 33 0.23
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 32 0.30
U56965-2|AAB52667.3| 581|Caenorhabditis elegans Hypothetical pr... 29 2.1
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu... 28 4.9
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical pr... 27 8.5
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 27 8.5
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 104 bits (250), Expect = 5e-23
Identities = 55/131 (41%), Positives = 78/131 (59%)
Frame = +1
Query: 64 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 243
M F R V+ GRV +A G +GKL ++V+VID R +DGP S V R L L LTKF
Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60
Query: 244 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 423
LK T+ V+ A+ AK+ E + ++QWA+K+A + RA++TD++R+KL A+ RN
Sbjct: 61 VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120
Query: 424 RARTAVFKSLK 456
R LK
Sbjct: 121 RIVRVELAKLK 131
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 32.7 bits (71), Expect = 0.23
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 238 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 411
+FR+ K A A + +KA T EK + AQK A EK+A+ T + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163
Query: 412 VKRNRARTAVFKSLKVKAARA 474
VK+ ++ + K K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 32.7 bits (71), Expect = 0.23
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 238 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 411
+FR+ K A A + +KA T EK + AQK A EK+A+ T + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163
Query: 412 VKRNRARTAVFKSLKVKAARA 474
VK+ ++ + K K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 325 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 471
E+QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>U56965-2|AAB52667.3| 581|Caenorhabditis elegans Hypothetical
protein C15H9.5 protein.
Length = 581
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 623 ILYSLLKICLSHITCRRHKNNYFLAGFLVAFLVRTFFAAALGIFF 489
ILY L + SH+ CR + N + +A LV F AL +FF
Sbjct: 266 ILYFGLAVYWSHLLCRSNSENIYRVHKFMAVLV---FLKALSVFF 307
>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
protein 1 protein.
Length = 1010
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -2
Query: 501 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 388
RDI LA TS RS HL + + +PGT L S + L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 310 NEKWTESQWAQKLANKEKRAQMTDYDRFK 396
N KW A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
>Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical
protein T25G3.3 protein.
Length = 513
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 294 DRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVNSCTS*EEPCQDCRIQELEGEGCAC 473
D C + K + +++ Q+E TN L+ V T + C DCR E + AC
Sbjct: 95 DACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEFTVHSQLCDDCRRAEAKDFWRAC 154
Query: 474 WYLRQ 488
+RQ
Sbjct: 155 VQVRQ 159
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 27.5 bits (58), Expect = 8.5
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 10 PEILFESTLFVLRRCKNVMPFARYVEPGRVALVADGPLKGKLVSVVDVIDQT-RALVDGP 186
P++ T F L K V + + PG V +V G KGK V + + Q+ LV GP
Sbjct: 48 PKLQRNGTKFALGHSKTVT-LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGP 106
Query: 187 G--SGVPRQQI 213
+G P ++I
Sbjct: 107 HKINGFPLRRI 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,162,144
Number of Sequences: 27780
Number of extensions: 300004
Number of successful extensions: 878
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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