Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n23
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81495-7|CAB04060.1|  444|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical ...    28   6.8  
AL110479-9|CAB60315.3|  583|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z81495-7|CAB04060.1|  444|Caenorhabditis elegans Hypothetical
           protein F08G2.7 protein.
          Length = 444

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 132 LEKIDDNGGIVAMPDTGMLNLEKMFHEQCIQRWRREHTRDPFNRAIKYYFNFPPKT 299
           LEK  D+   + +     L+ EK   E   ++W+    + PF   I   F FPP T
Sbjct: 214 LEKEKDDLVKMLLQSNAKLDKEKKKTEYFKRKWQEAEHKIPFGNPIMPQFGFPPAT 269


>Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical
           protein F15A4.4 protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 30  VIMFCTVCLKDRNYYMFKLF 89
           + +FC VCLK+R Y +F+ F
Sbjct: 250 IFVFCEVCLKNRLYLLFQFF 269


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 114 TECQICLEKIDDNGGIVAMPDTGMLNLEKMFHEQCIQRWRREHTRDPFNRAIKYY-FNFP 290
           TEC ICLE++ +        +T      + FH +C  +W  E    P  R +     ++P
Sbjct: 440 TECAICLEEMYN------FKETIKCECRRRFHSKCATKWLNEKRECPTCRKLMLNPSDYP 493

Query: 291 P 293
           P
Sbjct: 494 P 494


>AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical
           protein F40G9.14 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = +3

Query: 117 ECQICLEKIDDNGGIVAMPDTGMLNLEKMFHEQCIQRWRRE-HTRDPFNRAIKYYFNFPP 293
           EC+IC EK +  G         + N    + E CIQ  + +   + PF     Y  NF  
Sbjct: 137 ECKICFEKYEVTGN----RSPRVFNCGHTYCESCIQVCKHQFQIKCPFCTTTSYQINFST 192

Query: 294 K--TLEECNAMLRET 332
               LE  N   ++T
Sbjct: 193 NKLILEVLNGKSKDT 207


>AL110479-9|CAB60315.3|  583|Caenorhabditis elegans Hypothetical
           protein Y105C5B.11 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 114 TECQICLEKIDDNGGIVAMPDTGMLNLEKMFHEQCIQRW 230
           +EC IC E ID   G V  P        +++H  C  +W
Sbjct: 526 SECIICREDIDLENGTVQCP-----RCTEIYHSHCATQW 559


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,995,396
Number of Sequences: 27780
Number of extensions: 311043
Number of successful extensions: 656
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)