Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n20
         (177 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   0.57 
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   1.3  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    23   4.1  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    23   4.1  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    23   4.1  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    23   4.1  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    22   9.4  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    22   9.4  

>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 50  ARRTHSLSGVSVRSFT*SVQCMGIHP*DLLPLTPYP 157
           A R+H + G +V   T  V  +G H   L PL P P
Sbjct: 637 ANRSHKILGRTVCCLTSLVSDLGNHMQSLKPLAPLP 672


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 16  LDRCFPQFTNRGPAHTLIKWGFSKVFHLISPMHGDSSMRSLTI 144
           ++RC       GP H L+K G   V +L      D  +R + I
Sbjct: 195 MERCAAVIHKLGPKHVLLKGGHMPVNNLGLKSSDDEDLRVVDI 237


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1018

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 70   KWGFSKVFHLISPMHGDSSMRS 135
            KW   K+F +I P+  D   RS
Sbjct: 959  KWDPDKIFGMIKPLQMDEYFRS 980


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 556

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 43 NRGPAHTLIKWGFSKVF 93
          +RG AHT ++ GF K F
Sbjct: 43 SRGDAHTRMRQGFEKSF 59


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 79  FSKVFHLISPMH 114
           + K FHLISP+H
Sbjct: 302 YQKDFHLISPLH 313


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 73  WGFSKVFHLISPMHGDSSMR 132
           +GF  + +L+  +HG+SS+R
Sbjct: 402 YGFRNIQNLVRRVHGNSSVR 421


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 66   ECVRRASVRKLWKTSVKALISK 1
            +C R+A+  K+WK    A I K
Sbjct: 1238 DCARKANSIKVWKQVGTACIDK 1259


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 1   LAN*SLDRCFPQFTNRGPA 57
           LAN S DR  PQF  R  A
Sbjct: 228 LANESWDRFLPQFKKRNVA 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,006
Number of Sequences: 5004
Number of extensions: 11388
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)