Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n20
         (177 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0315 - 29165965-29166472,29167378-29167769                       26   4.9  
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102...    25   8.6  
04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976...    25   8.6  
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511...    25   8.6  

>05_07_0315 - 29165965-29166472,29167378-29167769
          Length = 299

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 155 GRVSMVRDLMDESPCIGLIR*KTLLKPHLMSVCAGPRFVN 36
           G V +   +   + CI   R   L   H+  VCA PR++N
Sbjct: 96  GAVVVAHSMSAMAACIAAQRRPDLFA-HIFLVCASPRYIN 134


>05_01_0154 +
           1020650-1022050,1022304-1022373,1022496-1022617,
           1022753-1023031,1023402-1023779,1024079-1024188,
           1024394-1024622,1024725-1025303
          Length = 1055

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 99  QVKDLTETPLNECVRRASVRKLWKTSVKAL 10
           Q++D +  PL+E  R+A +  L + S+KAL
Sbjct: 545 QLQDGSVVPLDEKSRKAILENLHEMSIKAL 574


>04_04_0808 -
           28196563-28196735,28197369-28197440,28197540-28197666,
           28198362-28198430,28198517-28198583,28198751-28198872,
           28199302-28199412,28199596-28199661,28200156-28200213,
           28200307-28200343,28200420-28200513,28200967-28201032,
           28201139-28201203,28201352-28201496,28201925-28202074,
           28202266-28202335,28202752-28202828,28202919-28202987,
           28203798-28203881,28204018-28204061,28204172-28204273,
           28204420-28204618,28204672-28204727,28204886-28204958,
           28205685-28205771,28205863-28205976,28206985-28207092,
           28207183-28207278,28207722-28207787,28208130-28208222,
           28208429-28208512,28208961-28209078,28209191-28209267,
           28209459-28209641,28210542-28210636,28210903-28211053,
           28212218-28212325,28212513-28212612,28212788-28212840,
           28214022-28214102
          Length = 1269

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 113 CIGLIR*KTLLKPHLMSVCAGPR 45
           CIGLIR K  ++P  + V +G R
Sbjct: 308 CIGLIRFKVEIRPEKLWVSSGSR 330


>02_05_0924 -
           32749682-32750200,32750756-32750959,32751062-32751109,
           32751769-32751819,32751907-32752032,32752117-32752257,
           32752750-32752971,32753160-32753312,32753536-32753718,
           32753964-32754110,32754212-32754319,32754426-32754530,
           32754824-32754928,32755243-32755310,32755498-32755576,
           32755876-32755935,32756023-32756076,32756168-32756233,
           32756701-32756753,32757042-32757096,32757645-32757787,
           32758236-32758333,32758436-32758716
          Length = 1022

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 138 KRSHG*IPMHWTDQVKDLTETPLNECVRRASVRKLWKTSVKALIS 4
           +RS G IP+   D    + ETP  E + R S  +++   V  L++
Sbjct: 213 QRSPGIIPLAVKDAFSIIQETPNREFLLRVSYLEIYNEVVNDLLN 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,929,824
Number of Sequences: 37544
Number of extensions: 75224
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 14,793,348
effective HSP length: 38
effective length of database: 13,366,676
effective search space used: 267333520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)