Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28n20
(177 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical pr... 26 4.1
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 25 5.4
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 25 5.4
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 25 5.4
Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z81512-5|CAI79169.1| 417|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z81476-4|CAB03923.1| 707|Caenorhabditis elegans Hypothetical pr... 25 9.4
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr... 25 9.4
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 25 9.4
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 25 9.4
AF024502-7|AAB70377.3| 352|Caenorhabditis elegans Hypothetical ... 25 9.4
>U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical
protein F47D12.5 protein.
Length = 633
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 28 FPQFTNRGPAHTLIKWGFSKVFHLISPMHGDSSM 129
FP NR PA++LI+ F ++ ++I DS +
Sbjct: 534 FPTIVNREPANSLIRECFPEISNVIKIPVSDSKI 567
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 102 DQVKDLTETPLNECVRRASVRKLWKTSVKALISK 1
D V DL N + +V K WKTS LI K
Sbjct: 409 DNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFK 442
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 102 DQVKDLTETPLNECVRRASVRKLWKTSVKALISK 1
D V DL N + +V K WKTS LI K
Sbjct: 580 DNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFK 613
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 102 DQVKDLTETPLNECVRRASVRKLWKTSVKALISK 1
D V DL N + +V K WKTS LI K
Sbjct: 319 DNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFK 352
>Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical
protein C07A9.10 protein.
Length = 254
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = -1
Query: 138 KRSHG*IPMHWTDQV-KDLTETPLNECV-----RRASVRKLWKTSVK 16
KR G PM WTD + K++T + + +A RK WK ++
Sbjct: 14 KRPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKAVIR 60
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 115 GDSSMRSLTIDTLP*TSFLID 177
GDS++ TID +P SF++D
Sbjct: 455 GDSNVLYKTIDVIPAGSFIVD 475
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 115 GDSSMRSLTIDTLP*TSFLID 177
GDS++ TID +P SF++D
Sbjct: 455 GDSNVLYKTIDVIPAGSFIVD 475
>Z81512-5|CAI79169.1| 417|Caenorhabditis elegans Hypothetical
protein F25C8.5 protein.
Length = 417
Score = 24.6 bits (51), Expect = 9.4
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Frame = +1
Query: 13 SLDRCFPQFTNRGPAHTL--------IKWGFSKVFHLISPMHGDSSMRSLTIDTL 153
S+D F TN A T +KW K+F +HG S + S T++ L
Sbjct: 237 SVDDAFVHLTNVAVAKTAADYDPERGLKWSLPKLFRFFKSVHGQSKL-SKTMNDL 290
>Z81476-4|CAB03923.1| 707|Caenorhabditis elegans Hypothetical
protein C25F9.5 protein.
Length = 707
Score = 24.6 bits (51), Expect = 9.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -1
Query: 72 LNECVRRASVRKLWK 28
+ EC+ +A + K+WK
Sbjct: 661 MEECINKADIEKIWK 675
>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
protein T04G9.1 protein.
Length = 1610
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 93 KDLTETPLNECVRRASVRKLWKTS 22
K +TET L+ +R + R WK S
Sbjct: 241 KQVTETDLDRAMRLVNCRSHWKNS 264
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 115 GDSSMRSLTIDTLP*TSFLID 177
GDS++ TID +P SF++D
Sbjct: 455 GDSNVLYKTIDVIPAGSFIVD 475
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 115 GDSSMRSLTIDTLP*TSFLID 177
GDS++ TID +P SF++D
Sbjct: 455 GDSNVLYKTIDVIPAGSFIVD 475
>AF024502-7|AAB70377.3| 352|Caenorhabditis elegans Hypothetical
protein M151.6 protein.
Length = 352
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 88 VFHLISPMHGDSSMRSLTIDTLP 156
+FH++ P + SS+ S T+ +LP
Sbjct: 19 LFHIVMPKYNHSSLLSETLFSLP 41
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,184,874
Number of Sequences: 27780
Number of extensions: 63442
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,740,198
effective HSP length: 39
effective length of database: 11,656,778
effective search space used: 221478782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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