Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n19
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.4  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   7.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.1  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.4  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 350 DPKIQQDMKHWPF 388
           DP + +D +HW F
Sbjct: 855 DPAVYEDWRHWKF 867


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 576 RWESLKYAGTVTTASRTVLP 517
           +W+S+  +GT T  +RT+ P
Sbjct: 448 QWKSILESGTTTLQTRTMHP 467


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 572 QRQATKDAGAIAGLNVLRIINEPTAAALAYG 664
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 93 FHNKQYITRRKTFQFA 46
          FH  +Y+TRR+  + A
Sbjct: 27 FHYNRYLTRRRRIEIA 42


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 93  FHNKQYITRRKTFQFA 46
           FH  +Y+TRR+  + A
Sbjct: 289 FHYNRYLTRRRRIEIA 304


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 93 FHNKQYITRRKTFQFA 46
          FH   Y+TRR+  + A
Sbjct: 27 FHYNHYLTRRRRIEIA 42


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 93 FHNKQYITRRKTFQFA 46
          FH  +Y+TRR+  + A
Sbjct: 27 FHFNRYLTRRRRIEIA 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,209
Number of Sequences: 438
Number of extensions: 4729
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)