Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n13
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   4.4  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    24   5.9  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    24   7.8  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    24   7.8  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    24   7.8  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    24   7.8  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 189 HSRINYLSFVWKDSLYM*LISILSKNYP 106
           H+R  + SF+ +D+ Y  +I+I    +P
Sbjct: 279 HARYIFASFISRDTTYQLIIAIWKNTHP 306


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 336 LRYPRQSGYRIVIWLRMLFLPLPQQFCYLLSRWRIHLT 223
           LR  RQ   RIV++  ++   +P Q    L+R  I +T
Sbjct: 814 LRLYRQKARRIVMYSFLIEYRMPSQILEQLNRCEIEMT 851


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 291 RMLFLPLPQQFCYLLSRWRIHLTSNFTINLFS*PHSRI 178
           R+++L L +++C L  +W   +   F    F    +RI
Sbjct: 438 RVIYLSLQEEYCTLKRKWYEDIHKQFNDRWFIEQRNRI 475


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 13  HKDRKIDEIKDIPIFVNLIIY 75
           HK +K   IKD+P+F +   Y
Sbjct: 834 HKKKKRKAIKDLPVFADAESY 854


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 312 YRIVIWLRMLFLPLPQQFCYLLSRWR 235
           Y  V++L +L  P+P+ +  +L RWR
Sbjct: 266 YMFVMYLTLL--PVPETYAPVLLRWR 289


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 303 RSYTHFDEDSGDH 341
           + YTHF++  GDH
Sbjct: 281 KEYTHFEKQFGDH 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,350,417
Number of Sequences: 5004
Number of extensions: 25361
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)