Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n11
         (113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   2.3  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    24   3.0  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    24   3.0  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    23   4.0  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    23   7.0  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   7.0  

>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 19  LQSFINLSLFGT*SYRLRYFVIKYTIK 99
           L   +NL  FG  +Y + Y+V KY  K
Sbjct: 140 LDQILNLVSFGLSAYVISYYVEKYVDK 166


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 283

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 89 YLITKYLRRYDYVPNSERLIND 24
          Y++++YL+  D VPN  + I D
Sbjct: 7  YILSEYLQTLDNVPNETKHIFD 28


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 74  YLRRYDYVPNSERLINDCSRR 12
           Y   +DY+ + ER ++DC++R
Sbjct: 78  YGYEWDYLEDLERHVDDCNKR 98


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 2   KRTCVYCSHLLISRYLEH 55
           + TC+YC H  +S+   H
Sbjct: 100 RSTCLYCHHFKLSKVKVH 117


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 95  IVYLITKYLRRYDYVPNSERLINDC 21
           I+  I KYL+ YD   N+  LI  C
Sbjct: 229 IISRIYKYLQEYDEKTNTHSLIVLC 253


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 17  YCSHLLISRYLEHNHIA*DIL 79
           YC   L S  L+HN++  +I+
Sbjct: 56  YCQRFLFSSNLKHNYVNLNII 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,854
Number of Sequences: 5004
Number of extensions: 3768
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)