Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n11
         (113 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical...    25   7.1  
U13019-13|AAC24450.1|  336|Caenorhabditis elegans Serpentine rec...    25   9.4  

>AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical
           protein C46E10.9 protein.
          Length = 393

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 23  SHLLISRYLEHNHI 64
           SHL I R+LEH+H+
Sbjct: 280 SHLEIQRHLEHHHL 293


>U13019-13|AAC24450.1|  336|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 9 protein.
          Length = 336

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +3

Query: 39  LAIWNIIISPKI 74
           L IWN IISPKI
Sbjct: 165 LIIWNTIISPKI 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,838
Number of Sequences: 27780
Number of extensions: 20234
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 12,740,198
effective HSP length: 19
effective length of database: 12,212,378
effective search space used: 219822804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)