Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n08
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   2.7  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   4.8  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    25   6.3  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    25   6.3  
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    25   8.4  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 481 LMSPL*NS--KYLLNSIASLDLINPTPPNFSSATWYTLPVNGSI*TLSGINTV 329
           L+SP  NS    LL SIA   L     P +SS + +  P NG +   SGI +V
Sbjct: 321 LLSPEENSLDDVLLVSIAGGGLDTHVVPEYSSISTFVPPSNGLMVFTSGIPSV 373


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 465 HNGDMRPPTHLTWHNKKYELDLNWFD 542
           H   +RPP   +W +    LDL+W D
Sbjct: 644 HGSAIRPPLAGSWSSCAENLDLSWKD 669


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -1

Query: 445 NSIASLDLINPTPPNFS---SATWYTLPVN 365
           NS+ SLDL+ P P N+S    + W  +P N
Sbjct: 209 NSVTSLDLVEP-PENYSWAPQSDWTFVPPN 237


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 447 SKYFEFHNGDMRPPTHLTWHNKKYELDLNWFDENV 551
           +K+ EF +   + P +L W+NK Y L    F + V
Sbjct: 166 TKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEV 200


>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -1

Query: 178 PVLFSLIRLKKNSRNFLSLKHEVKFFIL 95
           P  FSLIRL K+    LSL   V  FIL
Sbjct: 138 PRKFSLIRLLKSPMMLLSLASVVLVFIL 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,733
Number of Sequences: 5004
Number of extensions: 49770
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)