Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n08
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064829-1|AAH64829.1|  216|Homo sapiens similar to RIKEN cDNA C...   143   5e-34
BC064373-1|AAH64373.1|  216|Homo sapiens similar to RIKEN cDNA C...   143   5e-34
BC073936-1|AAH73936.1|  208|Homo sapiens MGC70857 protein protein.    125   1e-28

>BC064829-1|AAH64829.1|  216|Homo sapiens similar to RIKEN cDNA
           C030006K11 gene protein.
          Length = 216

 Score =  143 bits (346), Expect = 5e-34
 Identities = 67/154 (43%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
 Frame = +3

Query: 75  KLFLDDARIKNFTSCXXXXXXXXXXXXRIRLNKTGKYEAEFPFVSHCGRERNYIRCDDLP 254
           +LFLDD+++KNF +C            R+R N++G+YEA FPF+S CGRERN++RC+D P
Sbjct: 52  QLFLDDSKMKNFITCFKDPQFLVTFFSRLRPNRSGRYEAAFPFLSPCGRERNFLRCEDRP 111

Query: 255 IVFTHIFHEDN-VDFLSYGYAGDLLRTVFIPDKVYMLPLTGRVYHVAEEKFGGVGLIKSK 431
           +VFTH+   D+    LSY   G+ L   F P ++  L   GR+YH A E+ GGVGL++S 
Sbjct: 112 VVFTHLLTADHGPPRLSYCGGGEALAVPFEPARLLPLAANGRLYHPAPERAGGVGLVRSA 171

Query: 432 LAIELSKYFEFHNGDMRPPTHLTWHNKKYELDLN 533
           LA ELS  FE+  G    P+H+ W  ++  L ++
Sbjct: 172 LAFELSACFEYGPGAPALPSHVRWQGRRLALTMD 205


>BC064373-1|AAH64373.1|  216|Homo sapiens similar to RIKEN cDNA
           C030006K11 gene protein.
          Length = 216

 Score =  143 bits (346), Expect = 5e-34
 Identities = 67/154 (43%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
 Frame = +3

Query: 75  KLFLDDARIKNFTSCXXXXXXXXXXXXRIRLNKTGKYEAEFPFVSHCGRERNYIRCDDLP 254
           +LFLDD+++KNF +C            R+R N++G+YEA FPF+S CGRERN++RC+D P
Sbjct: 52  QLFLDDSKMKNFITCFKDPQFLVTFFSRLRPNRSGRYEAAFPFLSPCGRERNFLRCEDRP 111

Query: 255 IVFTHIFHEDN-VDFLSYGYAGDLLRTVFIPDKVYMLPLTGRVYHVAEEKFGGVGLIKSK 431
           +VFTH+   D+    LSY   G+ L   F P ++  L   GR+YH A E+ GGVGL++S 
Sbjct: 112 VVFTHLLTADHGPPRLSYCGGGEALAVPFEPARLLPLAANGRLYHPAPERAGGVGLVRSA 171

Query: 432 LAIELSKYFEFHNGDMRPPTHLTWHNKKYELDLN 533
           LA ELS  FE+  G    P+H+ W  ++  L ++
Sbjct: 172 LAFELSACFEYGPGAPALPSHVRWQGRRLALTMD 205


>BC073936-1|AAH73936.1|  208|Homo sapiens MGC70857 protein protein.
          Length = 208

 Score =  125 bits (301), Expect = 1e-28
 Identities = 58/127 (45%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
 Frame = +3

Query: 156 RIRLNKTGKYEAEFPFVSHCGRERNYIRCDDLPIVFTHIFHEDN-VDFLSYGYAGDLLRT 332
           R+R N++G+YEA FPF+S CGRERN++RC+D P+VFTH+   D+    LSY   G+ L  
Sbjct: 71  RLRPNRSGRYEAAFPFLSPCGRERNFLRCEDRPVVFTHLLTADHGPPRLSYCGGGEALAV 130

Query: 333 VFIPDKVYMLPLTGRVYHVAEEKFGGVGLIKSKLAIELSKYFEFHNGDMRPPTHLTWHNK 512
            F P ++  L   GR+YH A E+ GGVGL++S LA ELS  FE+  G    P+H+ W  +
Sbjct: 131 PFEPARLLPLAANGRLYHPAPERAGGVGLVRSALAFELSACFEYGPGAPALPSHVRWQGR 190

Query: 513 KYELDLN 533
           +  L ++
Sbjct: 191 RLALTMD 197


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,314,723
Number of Sequences: 237096
Number of extensions: 1624532
Number of successful extensions: 2167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2164
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)