Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n08
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79600-7|CAI79194.1|  173|Caenorhabditis elegans Hypothetical pr...    87   9e-18
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical...    27   7.7  
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z79600-7|CAI79194.1|  173|Caenorhabditis elegans Hypothetical
           protein F59C6.12 protein.
          Length = 173

 Score = 87.0 bits (206), Expect = 9e-18
 Identities = 51/129 (39%), Positives = 71/129 (55%)
 Frame = +3

Query: 78  LFLDDARIKNFTSCXXXXXXXXXXXXRIRLNKTGKYEAEFPFVSHCGRERNYIRCDDLPI 257
           LFLDD+R+KNFT+             +I+ NKTG+YE  FP+VS CG ERN++RCDD P+
Sbjct: 32  LFLDDSRMKNFTAAYKDIQFLNFFYRKIKENKTGRYEDTFPWVSLCGIERNFLRCDDTPL 91

Query: 258 VFTHIFHEDNVDFLSYGYAGDLLRTVFIPDKVYMLPLTGRVYHVAEEKFGGVGLIKSKLA 437
           V+T +  +     L  G +   +   F P  + M   +GRVYH      GG  L+  KL 
Sbjct: 92  VYTEL--DSTEKELRIGQS--TIYHSFQPSSLSM-NSSGRVYHKC--PIGGKALVADKLT 144

Query: 438 IELSKYFEF 464
            +L + F F
Sbjct: 145 DKLYRRFRF 153


>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
           protein Y39B6A.30 protein.
          Length = 1408

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/51 (41%), Positives = 26/51 (50%)
 Frame = -1

Query: 229 LRSLPQ*DTKGNSASYLPVLFSLIRLKKNSRNFLSLKHEVKFFILASSKNS 77
           L SL Q D  G SAS L  +FSL+ L+ +     S+   VK  I  SS  S
Sbjct: 603 LESLNQSDGIGISASALQNIFSLLDLESSINQLKSVDGIVKVGIDKSSNKS 653


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
           protein Y80D3A.8 protein.
          Length = 1293

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = -1

Query: 229 LRSLPQ*DTKGNSASYLPVLFSLIRLKKNSRNFLSLKHEVKFFILASSKNS 77
           L+SL Q D  G SAS L  +FSL+ L+ +     S+   VK  I  SS  S
Sbjct: 622 LKSLNQSDGIGISASALRNVFSLLDLESSINQLKSVDGIVKVGIDKSSNKS 672


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,869,297
Number of Sequences: 27780
Number of extensions: 264327
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)