Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n06
         (478 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    24   2.4  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    22   9.6  
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       22   9.6  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    22   9.6  

>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 447 TSTPGSMLIEVICFTISEGECRSITLLWIR 358
           +S+P +     +C+ +SE E   I +L+ R
Sbjct: 79  SSSPRTRQFRSVCYYVSESEMEKIEMLFAR 108


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 136 ETPGRGLPYSPHQDHSYFSQCALTR 210
           E PG  +P  PH   SY S   + +
Sbjct: 360 EMPGMSVPPQPHTHPSYGSPAEIPK 384


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 410 QITSINIEPGVEVEVTIAD 466
           Q+ S+N  PG E  +TIA+
Sbjct: 722 QLNSLNRGPGAENVITIAE 740


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 78  SAGIQQATWQPL*CQAKTSRNPRQRSPLFTASGSLLLLAM 197
           S   +  +W      +K  R PR+R P F +S   ++L +
Sbjct: 280 SRSTRPTSWPRSRPTSKPKRLPRRRRPFFFSSWWCIILVL 319


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,205
Number of Sequences: 2352
Number of extensions: 10552
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 42095889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)