Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28n03
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 31 0.82
01_01_0839 - 6540971-6541978,6542076-6542240,6542330-6542419,654... 31 0.82
11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658... 30 1.4
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 30 1.4
01_01_0602 - 4484972-4485450,4485949-4485997,4486108-4486237,448... 29 2.5
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 29 3.3
11_08_0021 + 27716298-27716478,27717137-27717309,27717408-277175... 29 3.3
04_04_0871 + 28898262-28898534,28899552-28900015,28900242-289003... 28 5.8
>03_01_0218 -
1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 31.1 bits (67), Expect = 0.82
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 510 RVASVAIHLSHFSFVQYSFDRNSQTKQSI*CNC*KYFHFNYSQE-FGQLSKQQRSSKVLR 334
R S + H SFVQ+ KQ+ C ++ S E FGQLSK SS+ +
Sbjct: 331 RDPSEMVSTKHVSFVQHKGSMKHSPKQAEVCA------YDDSMELFGQLSKAISSSEWAK 384
Query: 333 SQLRRHP 313
Q R HP
Sbjct: 385 PQPREHP 391
>01_01_0839 -
6540971-6541978,6542076-6542240,6542330-6542419,
6542536-6542736,6542886-6543098,6543216-6543461
Length = 640
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 317 IPPGHVMCPPREITKKVFHYAKWVRNPNKYKRYSELIARQSEAGG 183
+PP P EIT+ + A W ++ Y+RY+ ++ +S AGG
Sbjct: 532 LPPLAAAASPVEITQ-LNATASWKKDGRTYRRYAATVSNRSPAGG 575
>11_01_0787 +
6578158-6579287,6579439-6580870,6581087-6581097,
6581525-6582125,6583981-6585054,6585745-6585873,
6585925-6585963
Length = 1471
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = -2
Query: 581 VDVCNELKYPWNLITANS-FIVSTDESRQSQYIYRTFLLYNTVLTAILKQNNPFNVIAEN 405
VD C L P +++ S F+ S D + + R ++ VL+ K+NN V+AE
Sbjct: 360 VDRCQGL--PLAIVSIGSLFLFSEDYPISRESLVRLWIAEGFVLS---KENNTPEVVAEG 414
Query: 404 TSISIIVRNLGNCPNNKD--RVKCCDLN 327
+ +I RN+ N + RV C ++
Sbjct: 415 NLMELIYRNMLQIKENDELGRVTTCTMH 442
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 329 NYGGIPPG--HVMCPPREITKKVFHYAKWVRNPNKYKRYSELIARQSEAGG 183
N+ +P G H P EI +K A W ++ Y RY+ ++ +S AGG
Sbjct: 528 NHTSLPHGANHQHASPVEIEQKAT--ASWEKDGRTYHRYAVTVSNRSPAGG 576
>01_01_0602 -
4484972-4485450,4485949-4485997,4486108-4486237,
4486636-4486778,4486819-4486877,4487167-4487200,
4487489-4487629,4487719-4487907,4488027-4488122,
4488163-4488225,4488588-4489097
Length = 630
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 314 PPGHVMCPPREITKKVFHYAKWVRNPNKYK 225
P V+CP RE+T++VF AK + + +++
Sbjct: 209 PRAVVLCPTRELTEQVFRVAKSISHHARFR 238
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 94 IKFSQSNKCN*DASRACSWLFTFSRKLADAPPASDWRAINSLYRL 228
+K S N S SW+ +F + +A P++ WRA + ++ L
Sbjct: 777 LKILPSRSENSSQSSVISWVSSFITRAIEAYPSATWRACSCMHTL 821
>11_08_0021 +
27716298-27716478,27717137-27717309,27717408-27717578,
27717967-27718077,27718168-27718245,27718642-27718832,
27718873-27718958,27719202-27719206,27719301-27719378,
27719465-27719527,27719597-27719680,27720049-27720209,
27720377-27720416,27720774-27720893,27720993-27721211,
27721927-27722100,27722202-27722883,27722986-27723185,
27723269-27723407,27723502-27723677
Length = 1043
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 94 IKFSQSNKCN*DASRACSWLFTFSRKLADAPPASDWRAINSLYRL 228
+K S N S SW+ +F + +A P++ WRA + ++ L
Sbjct: 730 LKILPSRSENSSQSSVISWVSSFITRAIEAYPSATWRACSCMHTL 774
>04_04_0871 +
28898262-28898534,28899552-28900015,28900242-28900356,
28900510-28901157,28901282-28901374,28901658-28901795,
28902147-28902206
Length = 596
Score = 28.3 bits (60), Expect = 5.8
Identities = 27/97 (27%), Positives = 41/97 (42%)
Frame = -2
Query: 386 VRNLGNCPNNKDRVKCCDLNYGGIPPGHVMCPPREITKKVFHYAKWVRNPNKYKRYSELI 207
V+NL + P + R++ L GG G V I K FH ++V KR S
Sbjct: 204 VKNLTSEPRDASRLRIILLTSGGHFAGCVFDGNSVIAHKTFH--RYVVRAKAGKRQSGKD 261
Query: 206 ARQSEAGGASASLRENVNNQLHARDASQLHLLDWENF 96
A A A +SLR N+ + Q + W+++
Sbjct: 262 ATGKVAHSAGSSLRR--YNEAALKKEIQELIASWKSY 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,103,794
Number of Sequences: 37544
Number of extensions: 309722
Number of successful extensions: 818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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