Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n03
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78013-2|CAB01424.1|  453|Caenorhabditis elegans Hypothetical pr...    36   0.034
AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    30   1.7  
AC084159-7|AAK39370.2|  277|Caenorhabditis elegans Hypothetical ...    29   2.2  
U21309-3|AAN73880.2|  143|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z70207-8|CAM33501.1|  835|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z70207-5|CAA94127.2|  914|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF316542-1|AAG50270.1|  914|Caenorhabditis elegans serine/threon...    29   3.9  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z73977-2|CAA98291.2|  349|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z73968-1|CAA98230.2|  349|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z49128-2|CAA88959.1|  848|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    28   6.8  
AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine re...    27   9.1  
AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock pr...    27   9.1  

>Z78013-2|CAB01424.1|  453|Caenorhabditis elegans Hypothetical
           protein F15B9.6 protein.
          Length = 453

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 473 LLYNTVLTAILKQNNPFNVIAENTSISIIVRNLGNCPNNKDRVKCCDLNY 324
           LLY  V+  I++ N P +V     + +I+  NLG CP   DR+K C   +
Sbjct: 4   LLYFIVIL-IIQANVPGSVQDSPEAYNILEPNLGGCPRTSDRIKFCSAKF 52


>AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical
            protein Y26D4A.14 protein.
          Length = 952

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
 Frame = -2

Query: 569  NELKYPWNLI--TANSFIVSTDESRQSQYIYRTF------LLYNTVLTAILKQNNPFNVI 414
            N +K P N I   AN FIV T +     YIYR        + +N ++T++ K    F  I
Sbjct: 872  NYIKLPKNTIRENANFFIVFTQDKLNLDYIYRDHCGEIDKIKFNEMITSVWKDKYSFLTI 931

Query: 413  AENTSI 396
             + + I
Sbjct: 932  DKTSDI 937


>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = -2

Query: 578 DVCNELKYPWNLITANSFIVSTDESRQSQYIYRTFLLYNTVLTAILKQNNPFNVIAENTS 399
           D C + K+ WN+      I+  D S++S     T+LL++  L   L   NP     E  +
Sbjct: 100 DPCFQSKWYWNVFLDRILIMLKDHSQRSS----TWLLFSIALIRTLVIRNPMKTEYEKLT 155

Query: 398 ------ISIIVRNLGNCP 363
                 ++IIV +L  CP
Sbjct: 156 KPPTSFLAIIVVSLVFCP 173


>AC084159-7|AAK39370.2|  277|Caenorhabditis elegans Hypothetical
           protein Y73B3A.16 protein.
          Length = 277

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 573 NVDTLPAFTIAFCVISFDNVRALRQNNGPKF 665
           NV  +   T   CV+ F N R +RQ+  PK+
Sbjct: 111 NVCFIQPSTFHVCVVDFGNARTIRQDKPPKY 141


>U21309-3|AAN73880.2|  143|Caenorhabditis elegans Hypothetical
           protein C13B9.1 protein.
          Length = 143

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 405 IFSNYIKWIVLFENCGQNCIVQKKSAI 485
           I+ N  KW+ L  NC +N I+Q K ++
Sbjct: 79  IYGNLKKWLELILNCYRNIIIQTKKSM 105


>Z70207-8|CAM33501.1|  835|Caenorhabditis elegans Hypothetical
           protein F15A2.6b protein.
          Length = 835

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 611 AESDSESGQSVDVCNELKYPWNLITANSFIVSTDES 504
           AESDSE  Q +D  + +K  W    A+S  V  D++
Sbjct: 617 AESDSEDSQMIDTTDLVKKSWFGSLASSMSVERDDT 652


>Z70207-5|CAA94127.2|  914|Caenorhabditis elegans Hypothetical
           protein F15A2.6a protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 611 AESDSESGQSVDVCNELKYPWNLITANSFIVSTDES 504
           AESDSE  Q +D  + +K  W    A+S  V  D++
Sbjct: 617 AESDSEDSQMIDTTDLVKKSWFGSLASSMSVERDDT 652


>AF316542-1|AAG50270.1|  914|Caenorhabditis elegans serine/threonine
           kinase SAD-1 protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 611 AESDSESGQSVDVCNELKYPWNLITANSFIVSTDES 504
           AESDSE  Q +D  + +K  W    A+S  V  D++
Sbjct: 617 AESDSEDSQMIDTTDLVKKSWFGSLASSMSVERDDT 652


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -2

Query: 476 FLLYNT-VLTAILKQ---NNPFNVIAENTSISIIVRNLGNCPNNKDRVKCCDLNYGGIPP 309
           F  YNT VL +ILK+   + P  ++    +  + +R + + PN + +V CC      +P 
Sbjct: 309 FHKYNTHVLASILKEYLRSIPGKILLSG-NYELWMREIADEPNTEKKVSCCRALLSHLPT 367

Query: 308 GH 303
            H
Sbjct: 368 SH 369


>Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical
           protein F23A7.7 protein.
          Length = 965

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 405 IFSNYIKWIVLFENCGQNCIVQKKSAI 485
           I+ N  KW+ L  NC  N I+Q K ++
Sbjct: 203 IYGNLKKWLELILNCYGNIIIQTKKSM 229


>Z73977-2|CAA98291.2|  349|Caenorhabditis elegans Hypothetical
           protein C05A2.1 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 644 PQSAYIIKGDYAESDSESGQSVD--VCNELKYPWN 546
           P+S Y+  GDY +   +S +++   +C ++KYP N
Sbjct: 88  PESNYLFLGDYVDRGPKSIETIVLLLCYKIKYPNN 122


>Z73968-1|CAA98230.2|  349|Caenorhabditis elegans Hypothetical
           protein C05A2.1 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 644 PQSAYIIKGDYAESDSESGQSVD--VCNELKYPWN 546
           P+S Y+  GDY +   +S +++   +C ++KYP N
Sbjct: 88  PESNYLFLGDYVDRGPKSIETIVLLLCYKIKYPNN 122


>Z49128-2|CAA88959.1|  848|Caenorhabditis elegans Hypothetical
           protein M03C11.2 protein.
          Length = 848

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 237 QQVQTIQRINCAPIRSRRRICEFTRKRKQPA 145
           +Q+Q+ +R+     ++RR + E +RKRK PA
Sbjct: 106 EQIQSRERLQSRIDQARRGMVEVSRKRKAPA 136


>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
            protein Y40C7B.1 protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
 Frame = -2

Query: 569  NELKYPWNLI--TANSFIVSTDESRQSQYIYRTFL------LYNTVLTAILKQNNPFNVI 414
            N +K P N I   AN FIV T +     YIYR          +N ++T+I K    F  I
Sbjct: 836  NYIKLPKNTIRENANFFIVFTQDKLNLDYIYRDHCGEIDKSKFNEMVTSIWKVKYSFLTI 895

Query: 413  AENTSI 396
             + + I
Sbjct: 896  DKTSDI 901


>AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical
           protein C16A11.3 protein.
          Length = 726

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 609 CVISFDNVRALRQNNGPKF 665
           CV+ F N R +RQ+  PK+
Sbjct: 561 CVVDFGNARTIRQDKPPKY 579


>AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein141 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 578 DVCNELKYPWNLITANSFIVSTDESRQSQYIYRTFLLYNTVLTAILKQNNP 426
           D C + K+ WN+      I+  D S++S     T+LL++  L   L   NP
Sbjct: 100 DPCFQSKWYWNVFLDRILIMLKDHSQRSS----TWLLFSIALIRTLVIRNP 146


>AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock
           protein protein 4 protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -2

Query: 464 NTVLTAILKQNNPFNVIAENTSISIIVRNLGNCPNNKDRVKCCDLNYGGIPPGHVMCPPR 285
           NTV+    K++  F+  A++ S   IV   G  P   D  K  + +  GIPP     P  
Sbjct: 442 NTVIPT--KKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQI 499

Query: 284 EITKKV 267
           E+T ++
Sbjct: 500 EVTFEI 505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,384,051
Number of Sequences: 27780
Number of extensions: 287765
Number of successful extensions: 871
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)