Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28n03
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.37 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.86 
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              23   3.5  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   3.5  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 273 KGFSLRKVG*KPQQVQTIQRINCAPIRSRRRICEFTRKRKQPATCSRRVSITF 115
           KGF  R +  K Q     +   C+ +R  R  C++ R +K  A    R ++ F
Sbjct: 88  KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRF 140


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 16/73 (21%), Positives = 31/73 (42%)
 Frame = -2

Query: 320 GIPPGHVMCPPREITKKVFHYAKWVRNPNKYKRYSELIARQSEAGGASASLRENVNNQLH 141
           G P   +  PPRE      ++ K  R+  +YKR       ++         +E  +N+ +
Sbjct: 129 GPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENY 188

Query: 140 ARDASQLHLLDWE 102
             +  + H +DW+
Sbjct: 189 NWEHKETH-IDWQ 200


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 233 KYKRYSELIARQSEAGGASASLRENVNNQL 144
           K +RY+E I +Q      S + +EN+  +L
Sbjct: 58  KPQRYNECILKQFNIVDESGNFKENIVQEL 87


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 233 KYKRYSELIARQSEAGGASASLRENVNNQL 144
           K +RY+E I +Q      S + +EN+  +L
Sbjct: 58  KPQRYNECILKQFNIVDESGNFKENIVQEL 87


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 273 KGFSLRKVG*KPQQVQTIQRINCAPIRSRRRICEFTRKRK 154
           +GF  R +  K Q     +   C+ +R  R  C++ R +K
Sbjct: 39  QGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKK 78


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -2

Query: 593 SGQSVDVCNELKYPWNLITANSFIVSTDESRQSQYIYRTFLLYNTVLTAILKQNNPFNVI 414
           SG    +CN +KY  N     S I    +    ++ YR   ++N  L +     NP   I
Sbjct: 147 SGMFEALCNHIKYSTNKGNIRSAITIFPQRTDGKHDYR---VWNHQLISYAGYKNPDGTI 203


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 425 MDCFV*ELRSKLYCTKEKCDK 487
           +DC    +  K    KEKCD+
Sbjct: 361 LDCHTAHIACKFADIKEKCDR 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,165
Number of Sequences: 438
Number of extensions: 3421
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)