Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m23
         (703 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   4.0  
AY994089-1|AAX86002.1|  267|Anopheles gambiae hyp37.7-like precu...    23   7.0  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   7.0  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   7.0  

>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 303 KLNCIIKIPCYIVPNAGLPTF 365
           ++N ++ I CY+ P+AG+  F
Sbjct: 79  RINDVLFICCYVSPSAGVSEF 99


>AY994089-1|AAX86002.1|  267|Anopheles gambiae hyp37.7-like
           precursor protein.
          Length = 267

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 157 GHHFAWLLKYKTINVVRRVGSGAHASVALQHYIG 56
           G H A +++   IN     G+  + ++ALQ+YIG
Sbjct: 96  GTHAAHVVRVCAINA-GLTGANPNLTIALQNYIG 128


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 210 TVANTVPLIPENRLSCRAAIISLG 139
           TVA  +PL+P N L+    +I  G
Sbjct: 923 TVAGGLPLLPSNALAGNNGVIMTG 946


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 324 IPCYIVPNAGLPTFIIFLNTLNL 392
           + CY+ P  G+P F   +  ++L
Sbjct: 87  VSCYVSPQTGVPEFRSIMEKIDL 109


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,976
Number of Sequences: 2352
Number of extensions: 10849
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)