Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28m22
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 82 9e-17
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 61 1e-10
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 60 2e-10
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 58 1e-09
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 53 4e-08
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 52 6e-08
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 50 3e-07
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 50 5e-07
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 46 4e-06
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 46 6e-06
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 44 2e-05
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 36 0.006
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 35 0.014
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 33 0.042
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 28 1.6
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.9
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 6.4
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 26 6.4
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 6.4
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 26 6.4
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 25 8.5
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.5
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 8.5
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 81.8 bits (193), Expect = 9e-17
Identities = 47/114 (41%), Positives = 64/114 (56%)
Frame = +2
Query: 398 KETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHI 577
KE + TCL DL+ S++ + G +P++FI LR++ E F + QQDAHEF NFL+N +
Sbjct: 151 KENIYTCLKDLYCSVSCCDCRYGICSPERFIQVLRRDNEAFRSTQQQDAHEFFNFLLNSV 210
Query: 578 NEIILAERNQSTLKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCL 739
E TL N + V H P WVH +F+GTLTSET+CL
Sbjct: 211 TE---------TLDEYYGN-------HSDVMH---PKWVHSLFEGTLTSETKCL 245
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +2
Query: 170 MSICQDFGLNFQHRMGANISQLERDIGSEQFPPN---EHYFGLVNFGNTCYSNSVLQALY 340
MS+ + G+N S E ++ P + ++GL N+GNTCY +SVL +LY
Sbjct: 1 MSLLRWMGMNSPGSTDRRKSTWEAELPKPSIRPETLTDRFYGLTNYGNTCYVSSVLVSLY 60
Query: 341 FCRPFREKVLEY 376
+PFR+ + Y
Sbjct: 61 HLKPFRDSLNSY 72
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 61.3 bits (142), Expect = 1e-10
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Frame = +2
Query: 218 ANISQLERDIGSEQFPPNEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKA--KNK 391
AN +++ + E + P GL N GNTCY N VLQ L+ C+ +L+ + +N
Sbjct: 55 ANPKKVDSSLSYENYQP----IGLTNLGNTCYMNCVLQCLFACKDLTIPMLQGRGLLQNI 110
Query: 392 RTKETLLT--CLADLFYSIATQ---KKKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFL 556
TK L T + F+S+ SI+P+ F+ ++ +F Q DA EFL
Sbjct: 111 NTKNPLGTGGKITSAFFSLLQSVLLNHGQRSISPRNFLEIVQSLNRDFSIDGQCDAQEFL 170
Query: 557 NFLINHINEIILAERNQSTL 616
NF ++ ++E + + ++S +
Sbjct: 171 NFFLDKLHEDLNSNASRSPI 190
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 60.5 bits (140), Expect = 2e-10
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Frame = +2
Query: 284 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC---LADLFYSI--AT 448
GL N GNTCY NS LQ L R R+ + KN+ + L +A +F S+ +
Sbjct: 312 GLSNLGNTCYMNSALQCLTHTRELRDFFTSDEWKNQVNESNPLGMGGQVASIFASLIKSL 371
Query: 449 QKKKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINE 583
+ S AP++F A + K F Y QQD+ EFL FL++ ++E
Sbjct: 372 YSPEHSSFAPRQFKATIGKFNHSFLGYGQQDSQEFLAFLLDGLHE 416
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 58.0 bits (134), Expect = 1e-09
Identities = 31/102 (30%), Positives = 54/102 (52%)
Frame = +2
Query: 278 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKK 457
Y GL N G TCY NS+LQ+L+F FR+ V + N +++++ L +FY++ Q++
Sbjct: 229 YVGLKNQGATCYMNSLLQSLFFTNIFRKTVYKIPTDNDDSRDSVAYALQRVFYNLEKQRE 288
Query: 458 KVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINE 583
V + + FD++MQ D EF L +++ +
Sbjct: 289 PVSTTELTRSFG-----WNSFDSFMQHDIQEFNRVLQDNLEK 325
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 53.2 bits (122), Expect = 4e-08
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Frame = +2
Query: 284 GLVNFGNTCYSNSVLQALYFCRPFR------EKVLEYKAKNKRTKETLLTCLADLFYSIA 445
G +N GN C+ NS+LQAL +C PF +++ Y + LT L+ F +
Sbjct: 134 GFINTGNICFMNSILQALMYCVPFYNLLKQINRMVPYNFERTTPLIESLTMLSRDFREYS 193
Query: 446 TQKKKVG-SIAPKKFIARLRKEK--EEFDNYMQQDAHEFLNFLINHINEIILAERNQSTL 616
+ G SI P+ + + E Q+DA EFLN ++ ++E + ER L
Sbjct: 194 EKFDLQGDSILPEVVYSATKGNPRFEMLQTGEQEDAEEFLNLFLDELHEEFVRERRHYLL 253
Query: 617 KVQKNNSGENVTCNGSV 667
K + N ++ + +
Sbjct: 254 KNDERNPKSDIKISNGI 270
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 52.4 bits (120), Expect = 6e-08
Identities = 30/100 (30%), Positives = 48/100 (48%)
Frame = +2
Query: 278 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKK 457
Y GL N G TCY NS+LQ+LY FR V + + + K+++ L FY++ +
Sbjct: 212 YVGLKNQGATCYMNSLLQSLYIIHAFRRIVYQIPTDSPQGKDSIAYALQRCFYNLQFMNE 271
Query: 458 KVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHI 577
V + K + D++MQ D EF L +++
Sbjct: 272 PVSTTELTKSFG-----WDSLDSFMQHDVQEFNRVLQDNL 306
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 50.4 bits (115), Expect = 3e-07
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +2
Query: 284 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQK--- 454
GLVN GNTC+ NSVLQ + P + +L + + C + + A
Sbjct: 126 GLVNLGNTCFMNSVLQLMTQTPPLVQYLLSGQHSLSCRMNACVLCRMEQHVARAYPNKGT 185
Query: 455 KKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLIN 571
K+ + P + L+ F Y Q+DAHEF+ +L++
Sbjct: 186 KRASAFKPSGIQSMLKVISSHFRPYRQEDAHEFMRYLVD 224
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 49.6 bits (113), Expect = 5e-07
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Frame = +2
Query: 284 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKN------KRTKETLLTCLADLFYSIA 445
GL N G TC+ NS LQ L C + + ++ + K TK + L+ +
Sbjct: 209 GLKNLGATCFFNSTLQVLCACEALHDVISPFQYSHSSVIVRKLTKSPESSLLSAFIKFLE 268
Query: 446 TQKKKVGSIA---PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHI 577
T K G+I+ P F R+ +F +QQDAHE L L++ +
Sbjct: 269 TFYKSDGTISVYRPTTFFGEFRRLHPQFSESVQQDAHELLRLLLDDL 315
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Frame = +2
Query: 284 GLVNFGNTCYSNSVLQALYFCRPFREKVLE-YKAKNKRTKETLLTC-LADLFYSIATQKK 457
G+ N G TC+ + +LQ++ R + + T +TC + D+F SI K
Sbjct: 146 GIQNLGATCFMSVILQSILHNPLVRNLFFSGFHTSTDCKRPTCMTCAIDDMFSSIYNSKN 205
Query: 458 KVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHIN 580
K P + + K + Y QQD HEF +L++ ++
Sbjct: 206 KSTFYGPTAVLNLMWKLSKSLCGYSQQDGHEFFVYLLDQMH 246
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 46.0 bits (104), Expect = 6e-06
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Frame = +2
Query: 284 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 463
GL+N GNTCY NS +Q L + V ++ + E + ++ +
Sbjct: 101 GLINLGNTCYMNSTVQMLRAIPELSDAVSQFNSSGGLVAE---------YRTLLNSMQSN 151
Query: 464 GSIAPKKFIARLRKEKEEF-------DNYMQQDAHEFLNFLINHINEIILAERNQSTLKV 622
+ P +F+ LR E +F Y QQDA E +FL++ + +R+ S+ V
Sbjct: 152 APVTPMRFLQSLRMEYPQFAEMSRETGGYAQQDAEECWSFLLS------VLQRSLSSEWV 205
Query: 623 QKNNSGE 643
QKN +G+
Sbjct: 206 QKNMAGK 212
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 44.0 bits (99), Expect = 2e-05
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Frame = +2
Query: 284 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 463
GL N GN+CY NS LQ + + L + L + + S A+ K +
Sbjct: 280 GLYNLGNSCYMNSALQCMIHTHELTKYFLSDSYEKDINYNNPLGMMGKVALSYASLLKMI 339
Query: 464 ------GSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINE 583
S++P F + + F Y QQD+ EF+ F ++ ++E
Sbjct: 340 HHTADMHSVSPSSFKFIIGEFNTYFSGYRQQDSQEFIAFFLDGLHE 385
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 35.9 bits (79), Expect = 0.006
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 22/143 (15%)
Frame = +2
Query: 236 ERDIGSEQFPPNEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLE-YKAKNK--RTKET 406
E D F P GL N GN+CY S +Q+L+ + F L + N +T T
Sbjct: 287 EDDASKRLFGPG--LTGLKNLGNSCYLASTMQSLFSIKEFAIHELNLFNTYNSVCQTPTT 344
Query: 407 LLTC----LAD-LFYSIATQKKKVG-------SIAP-----KKFIAR--LRKEKEEFDNY 529
L C LAD L ++ K+G SI P + F+ + + + EF
Sbjct: 345 DLQCQLGKLADGLVSGKFSKPSKIGLLNNPSSSILPYQDGLRPFMFKDVVGQGHSEFGTS 404
Query: 530 MQQDAHEFLNFLINHINEIILAE 598
QQDA+EFL +L+ I + +A+
Sbjct: 405 QQQDAYEFLLYLLGKIRKSSIAK 427
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 34.7 bits (76), Expect = 0.014
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 284 GLVNFGNTCYSNSVLQALYFCRPFREKVLE 373
GL N GN CY NS++Q + +P R +L+
Sbjct: 615 GLENTGNLCYLNSLIQYYFIIKPLRNAILD 644
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 33.1 bits (72), Expect = 0.042
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +2
Query: 284 GLVNF-GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKK 460
GL N GN C+ N VLQ+L +E +LE K + + TL L +L +
Sbjct: 50 GLYNVSGNDCFLNCVLQSL----ASQESLLEI-LKLRCSSSTLYATLYELLQKL--NSGP 102
Query: 461 VGSIAPKKFIARLR-KEKEEFDNYMQQDAHEFLNFLI 568
I P F+ L ++ +QQDA EFL L+
Sbjct: 103 GNPITPGSFLNSLEIATNKKLVRSIQQDAQEFLQHLV 139
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 174 DICNSVLTTYQTNTRFSPPNEGV*NFSTVISRNIIN 67
+I N VL+ Y+T PPN G + I+RN+I+
Sbjct: 590 NIQNHVLSCYKTLFFEPPPNSGTNEAANYIARNLIS 625
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 298 WQHLLQQLSVASFIFLSPIQRESIRVQS*E*KDQGNSINMPGRFIL*HSYSKEKSWINC 474
W++ L QLS+ S I LSP IR + +S+ ++ ++ EKS +NC
Sbjct: 358 WRNPLPQLSIISHIILSPTSMFDIREFNVNPVVSVDSLKDYSEELVNYAKIYEKSNLNC 416
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 6.4
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 2/133 (1%)
Frame = +2
Query: 218 ANISQLERDIGSEQFPPNEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRT 397
+ +SQL ++Q PP+EH GL + S+S +F E N
Sbjct: 2 SRLSQLLNSKKAKQKPPSEHPIGLSSILKQDSSSSSDSPNFFPSSSTNDHQERDTINDTN 61
Query: 398 KETLLTCLADLFYSIATQKKKVGSIAP--KKFIARLRKEKEEFDNYMQQDAHEFLNFLIN 571
+A ++KK+ S P ++ + KEKE+ + + +FL+
Sbjct: 62 FVVPEKQKTSKLALLAAERKKLHSSFPSTQQQPPKTEKEKEKEPIQAKHKKNVENDFLLQ 121
Query: 572 HINEIILAERNQS 610
++ +AE+ S
Sbjct: 122 RFRKVRIAEKKDS 134
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 374 YKAKNKRTKETLLTCLADLFYSI--ATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQ 538
Y K+ +K TL+ + +I +Q KK+G P ++ K EFD+ + Q
Sbjct: 299 YGFKSSDSKATLIKIVESCLDAIDSRSQSKKLGKETPHDYLITSTKTVLEFDDIVTQ 355
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 223 YITVGKRYRVRAVPT*RTLFRISQFWQH 306
+ GKR+ V +PT R +F +S+ H
Sbjct: 232 FAATGKRFTVFLIPTVRQIFPVSKLLPH 259
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 25 VTVVLRFSVSKRNIINNVSRNNCREVL 105
+ V+ R+ +K I+ + +NN +EVL
Sbjct: 263 IKVITRYENAKGRIVEGIPKNNLKEVL 289
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 491 ARLRKEKEEFDNYMQQDAHEFLNFLINHIN 580
A KEK EF+ +Q+D L L + IN
Sbjct: 403 ASFMKEKTEFEEQLQEDNDHSLGDLFSKIN 432
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 728 SRLSMFLGIFRAPKSVRCCEALNHYTSHSHRSYSFE 621
S + +F+ I + P + C E LN S +R SFE
Sbjct: 532 SSIIIFISILKRPLASICSEDLNCLISVKNRLISFE 567
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 298 WQHLLQQLSVASFIFLSPIQ 357
W H+ QQ+ + SF L+P Q
Sbjct: 347 WDHITQQIGMFSFTGLTPAQ 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,683
Number of Sequences: 5004
Number of extensions: 64320
Number of successful extensions: 190
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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