Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m18
         (442 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8A6I6 Cluster: Putative uncharacterized protein; n=1; ...    33   2.1  
UniRef50_A7ASN5 Cluster: Putative uncharacterized protein; n=1; ...    33   3.6  
UniRef50_Q3YRS4 Cluster: Uroporphyrinogen III synthase HEM4; n=5...    31   8.3  

>UniRef50_Q8A6I6 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides thetaiotaomicron|Rep: Putative
           uncharacterized protein - Bacteroides thetaiotaomicron
          Length = 310

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = -1

Query: 361 IDICCRDFFFETFKGE*FCHTLF*RNFNRFRSAQSGSSQKGKNPDFESLFIV 206
           +DI    FF   F+ +   HT   RN + F+ + SGS  K +NPDFE  F V
Sbjct: 168 VDIFKGFFFIADFQKDFQGHTTILRN-SLFKLSSSGSRVKLENPDFEKTFDV 218


>UniRef50_A7ASN5 Cluster: Putative uncharacterized protein; n=1;
           Babesia bovis|Rep: Putative uncharacterized protein -
           Babesia bovis
          Length = 858

 Score = 32.7 bits (71), Expect = 3.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 43  YYKAEEFACLFVCLNALISGTIGTTSNFFSVSDSSFIQESCRLYNIT 183
           ++ +E+F CL  CLN L   T+ T  N  SV+ +    +   + N T
Sbjct: 328 WFVSEDFICLMACLNILCCVTLMTNENLMSVAFTMDANKKLSIDNTT 374


>UniRef50_Q3YRS4 Cluster: Uroporphyrinogen III synthase HEM4; n=5;
           canis group|Rep: Uroporphyrinogen III synthase HEM4 -
           Ehrlichia canis (strain Jake)
          Length = 240

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = -3

Query: 209 CCSAFVS---LGVMLYSLQLS*INELSDTEKKFEVVPIVPEISAFKQTNKQANSSAL*Y* 39
           C SAF+     GV+LYS + + I  L +  KK+ +   +  I+A+  +NK AN++     
Sbjct: 158 CYSAFLGNKISGVLLYSSRTAEI--LIELIKKYNIQDKISNITAYTMSNKIANTA----- 210

Query: 38  YRNAHW 21
            +N HW
Sbjct: 211 -KNVHW 215


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 383,258,041
Number of Sequences: 1657284
Number of extensions: 6748857
Number of successful extensions: 14760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14745
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22340008747
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)