Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m18
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   1.7  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    26   2.2  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    25   3.9  

>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 103 FLRLARSNK-QTNKQTLQLYNISIETRTGKNNWSY 2
           FL L+ S      KQ L+++N+ IE    K  W Y
Sbjct: 448 FLHLSDSTYLDLEKQVLRIFNVQIEELDAKTPWYY 482


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 55  EEFACLFVCLNALISGTIGTTSNFFSVSDSSFIQESCRL 171
           EE   ++   N L+  TI TTSN F+V   S   E+C L
Sbjct: 102 EEQIYVYDISNMLLLHTIETTSNVFAVCALSPNSENCYL 140


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 306 QNYSPLKVSKKKSRQHMS 359
           QNYS  K+ K+K R+H S
Sbjct: 320 QNYSSYKLKKRKFRRHRS 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,032
Number of Sequences: 5004
Number of extensions: 32011
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)