Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m18
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1156 - 24760332-24761530,24762757-24763648                       29   1.3  
12_01_0722 + 6355972-6359031                                           27   5.1  
01_06_1464 + 37537218-37537387,37537738-37537897,37539521-375397...    27   5.1  
12_01_0740 + 6646471-6649407                                           27   8.8  
04_03_0340 - 14634664-14634770,14634968-14635076,14635150-146352...    27   8.8  
02_02_0728 + 13416481-13416889,13416979-13417065,13417220-134173...    27   8.8  

>08_02_1156 - 24760332-24761530,24762757-24763648
          Length = 696

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 215 IYCCSAFVSLGVMLYSLQLS*INELSDTEKKFEV 114
           I CCSA +  G   YS+Q+   NE+S+ + +  V
Sbjct: 181 IGCCSAAIPKGYTSYSIQIQPANEISEFDAESSV 214


>12_01_0722 + 6355972-6359031
          Length = 1019

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 342 TFFLKLLKGNNFVIHYFSVTLTVSAAPKAEALKREKTPILNHYLLLLRFC*S---WCDVI 172
           TFF   L   N VI+Y+S T++  + P  E L    T +    L ++    +   WCD +
Sbjct: 181 TFFEDELDDENNVIYYYSDTISQLSEPSLETLLANLTNLEELRLGMVNMSRNGARWCDAM 240


>01_06_1464 +
           37537218-37537387,37537738-37537897,37539521-37539787,
           37540541-37540646,37541411-37541678,37541915-37542020,
           37542891-37542950,37544349-37544445,37544613-37544803,
           37545518-37545583,37545879-37545944,37547510-37547583,
           37547910-37548000,37548079-37548236,37548424-37548466,
           37548621-37548686,37549113-37549190,37549361-37549453
          Length = 719

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = -3

Query: 206 CSAFVSLGVMLYSLQLS*INELSDTEKKFEVVPIVPEISAFKQTNK 69
           CSA+++ G  +Y ++++   E+    K+  ++PI  E++  ++  K
Sbjct: 483 CSAYLASGCRVYKIEIAMEGEMLSKGKESLLIPINAEVAVARELCK 528


>12_01_0740 + 6646471-6649407
          Length = 978

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 342 TFFLKLLKGNNFVIHYFSVTLTVSAAPKAEALKREKTPILNHYLLLLRFC*S---WCDVI 172
           TFFL      N + +Y+S T++  + P  E L    T +    L ++    +   WCD I
Sbjct: 140 TFFLYEQDEENSITYYYSETMSQLSEPSLETLLANLTNLEELRLGMVNMSSNGARWCDAI 199


>04_03_0340 -
           14634664-14634770,14634968-14635076,14635150-14635236,
           14635325-14635392,14635929-14636076
          Length = 172

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 130 SVSDSSFIQESCRLYNITPRLTKAEQ 207
           +  +   + ++C LYN+TPR T   Q
Sbjct: 129 ATQEKMVLTDTCNLYNLTPRRTTVAQ 154


>02_02_0728 +
           13416481-13416889,13416979-13417065,13417220-13417351,
           13417474-13417539,13417754-13418919
          Length = 619

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 306 VIHYFSVTLTVSAAPKAEALKREKTPILNHYLLLLRF 196
           VI +F VTLT     K +AL   +TP    + ++  F
Sbjct: 26  VIGFFLVTLTFVVISKPDALLFNRTPCRRRFFIIFFF 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,520,080
Number of Sequences: 37544
Number of extensions: 160920
Number of successful extensions: 273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)