Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m18
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U67949-1|AAL06028.2|  633|Caenorhabditis elegans Hypothetical pr...    28   2.6  

>Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 400 FNIKNLIVSQPLNIDICCRDFFFETFKGE*F 308
           FN K  + S+PLN D+  R+F  + F G+ F
Sbjct: 164 FNAKKNVTSEPLNADLMAREFSIQ-FGGQAF 193


>Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 400 FNIKNLIVSQPLNIDICCRDFFFETFKGE*F 308
           FN K  + S+PLN D+  R+F  + F G+ F
Sbjct: 164 FNAKKNVTSEPLNADLMAREFSIQ-FGGQAF 193


>Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical
           protein H15N14.2b protein.
          Length = 758

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 400 FNIKNLIVSQPLNIDICCRDFFFETFKGE*F 308
           FN K  + S+PLN D+  R+F  + F G+ F
Sbjct: 98  FNAKKNVTSEPLNADLMAREFSIQ-FGGQAF 127


>U67949-1|AAL06028.2|  633|Caenorhabditis elegans Hypothetical
           protein F55A4.10 protein.
          Length = 633

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 286 NFNRFRSAQSGSSQKGKNPDFESLFIVAPLLLVLV 182
           +FN F +  +G S K ++  F  +FI A +L+VLV
Sbjct: 277 SFNNFDTLNTGQSSKKRS--FSMIFITAVILIVLV 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,164,613
Number of Sequences: 27780
Number of extensions: 172751
Number of successful extensions: 326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)