Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m16
         (636 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   2.0  
AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    23   6.1  
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    23   6.1  
AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinestera...    23   6.1  
AY745222-1|AAU93489.1|  276|Anopheles gambiae cytochrome P450 pr...    23   8.1  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 156 KQRRLERQHAQTAARFKQACLQTGVAVQ 239
           K+ RLE+Q A   A  KQ C +  V  Q
Sbjct: 207 KEARLEKQEADRYASLKQECSEKQVHFQ 234


>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 245 DTIGPMAQSLFLMC--TTDLFARTAQQSNGPTA 337
           ++ G ++ SL L+   + DLF R   QS  PTA
Sbjct: 359 ESAGAVSVSLHLLSALSRDLFQRAILQSGSPTA 391


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 245 DTIGPMAQSLFLMC--TTDLFARTAQQSNGPTA 337
           ++ G ++ SL L+   + DLF R   QS  PTA
Sbjct: 359 ESAGAVSVSLHLLSALSRDLFQRAILQSGSPTA 391


>AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 623

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 245 DTIGPMAQSLFLMC--TTDLFARTAQQSNGPTA 337
           ++ G ++ SL L+   + DLF R   QS  PTA
Sbjct: 245 ESAGAVSVSLHLLSALSRDLFQRAILQSGSPTA 277


>AY745222-1|AAU93489.1|  276|Anopheles gambiae cytochrome P450
           protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 327 DRQLASIKKPGSRQTAAPFFRFSSFGRICFG 419
           DR  AS K  G+ +   PF  F    R C G
Sbjct: 203 DRFAASSKLSGASKNRPPFMPFGLGPRHCIG 233


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,424
Number of Sequences: 2352
Number of extensions: 11628
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)