Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m11
         (188 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1165 + 34630369-34630431,34630771-34630855,34631212-346313...    27   1.6  
09_04_0324 - 16686872-16687074,16687479-16687521,16687735-166880...    25   6.4  
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227...    25   6.4  
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044...    25   6.4  
08_01_0827 + 8016704-8017150                                           25   8.5  

>02_05_1165 +
           34630369-34630431,34630771-34630855,34631212-34631332,
           34631588-34631831,34631922-34632026,34632110-34632154,
           34632243-34632395,34632481-34632762,34632844-34632980,
           34633065-34633152
          Length = 440

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 76  TPFSPWFCLTPSEGPTVSAYVWDF 5
           TPF  W  +  S G T+    WDF
Sbjct: 311 TPFWVWMVIISSSGATIYQLYWDF 334


>09_04_0324 -
           16686872-16687074,16687479-16687521,16687735-16688068,
           16688190-16688854
          Length = 414

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 172 KRGXSSVSGPLDEHSNDVLFFFDMPEALSLHLT 74
           +RG   V   LD     VL+FF     +  HLT
Sbjct: 298 QRGAPPVISVLDRQDASVLYFFMQQHLVGFHLT 330


>08_02_0520 - 18121561-18121821,18122216-18122470,18122560-18122731,
            18122824-18123105,18123159-18123292,18123425-18123508,
            18123611-18123901,18123982-18124314,18124620-18124750,
            18124826-18124930,18125011-18125167,18125248-18125351,
            18125442-18125602,18125800-18126116,18126369-18126650,
            18127011-18127312,18127609-18127699,18127771-18127824,
            18128110-18128186,18128279-18128438,18128545-18128629,
            18129059-18129367,18129514-18129890
          Length = 1507

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 172  KRGXSSVS-GPLDEHSNDVLFFFDMPEALSLHLTPFSP 62
            KRG   +  GPL  HS D++ +F+  E +S     ++P
Sbjct: 1117 KRGGEEIYVGPLGHHSCDLIEYFEGVEGVSKIKPGYNP 1154


>01_05_0662 -
           24103475-24103735,24103831-24104085,24104280-24104451,
           24104535-24104762,24104864-24104997,24105101-24105184,
           24105273-24105563,24105660-24105992,24106081-24106334,
           24106435-24106591,24106674-24106777,24106879-24107039,
           24107216-24107529,24107614-24107895,24107991-24108292,
           24108367-24108457,24108566-24108619,24108785-24108861,
           24108963-24109207,24109322-24109410,24110811-24111254
          Length = 1443

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 184 TASTKRGXSSVSGPLDEHSNDVLFFFDMPEAL 89
           ++++++G      PL    NDV +  DMPEA+
Sbjct: 829 SSASRKGMVLPFAPLSISFNDVRYSVDMPEAM 860


>08_01_0827 + 8016704-8017150
          Length = 148

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 3   KKSQT*AETVGPSDGVKQNHGEKGVK*RLRASGISKKNRTSFECSSNG 146
           +K +T    VG +DGV++NHG  G     R + +     ++ E S  G
Sbjct: 89  RKMETANVGVGGADGVERNHGVIGWGRGGRGAQVEADEASTAEASWRG 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,498,210
Number of Sequences: 37544
Number of extensions: 65484
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)