Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m11
         (188 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49207-9|CAA89068.2|  379|Caenorhabditis elegans Hypothetical pr...    28   1.1  
AL132948-27|CAC51046.1|  373|Caenorhabditis elegans Hypothetical...    27   1.8  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    26   3.2  
AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical ...    26   4.3  

>Z49207-9|CAA89068.2|  379|Caenorhabditis elegans Hypothetical
           protein R07E3.3 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 146 SIRRAFKRCPVFLRYARSPKSSFNTLFTVVLLNP 45
           S+R  F +C +  R++ SP+  F +   VV  NP
Sbjct: 76  SLRLTFDQCAIEKRHSTSPRGLFLSTNVVVAFNP 109


>AL132948-27|CAC51046.1|  373|Caenorhabditis elegans Hypothetical
           protein Y39B6A.35 protein.
          Length = 373

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 112 FFDMPEALSLHLTPFSPWFCLTPSEGPTVSAYVW 11
           F  MP   ++HLTPF P   L      + S  +W
Sbjct: 86  FCGMPAGAAVHLTPFDPLGKLPGGYNDSKSVAIW 119


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 16  RKQKLLALQMGLSRTTVKRVLNEDLGLRAYRRKTGHRLNA 135
           R++ L +L       T+K  L   L +R  +  TG++LNA
Sbjct: 160 RRRSLPSLTASAPGNTLKEPLRSVLNMRGRKATTGNKLNA 199


>AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical
           protein F54D7.3 protein.
          Length = 401

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 142 LDEHSNDVLFFFDMPEALSLHLTP 71
           + E SNDV+FFF +   + +++ P
Sbjct: 178 IGELSNDVVFFFSIVNIIQVYIAP 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,884,661
Number of Sequences: 27780
Number of extensions: 59107
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)