Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m09
         (644 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   3.8  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   6.6  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   8.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 56   STTTRVISTTNQLNIKEIRERTEGTNLVIEGVTLPSP 166
            +TTT   +TT +        R   TN   +G T+P P
Sbjct: 1053 TTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPP 1089


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 371 CKRQQKKIGKMVSMAQKAGLMINLTPSNSKKDPT 472
           C++QQK+  +  S+ + + L     P  +K  PT
Sbjct: 124 CRQQQKQHNQQQSVEKSSKLKNKSAPILTKTSPT 157


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 8   AGLVRLGYSLAKKSILSTT 64
           A ++  GY+LAK  I ++T
Sbjct: 166 ASIINFGYTLAKFMIFTST 184


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +2

Query: 98  IKEIRERTEGTNLVIEGVTLPSPRTELLVRPPNVTPPL 211
           ++E+R   +  NL++    LP+  + +   P  ++P L
Sbjct: 201 VRELRGAFKAENLLVTLTVLPNVNSTVYYDPRALSPNL 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,666
Number of Sequences: 336
Number of extensions: 3413
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)