Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28m09
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|... 32 0.062
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 29 0.57
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.3
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 2.3
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 27 3.1
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 26 4.0
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 26 5.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.3
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 7.1
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 7.1
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 9.3
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 9.3
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 9.3
>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 166
Score = 32.3 bits (70), Expect = 0.062
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 308 LILSQFVRSDGCMLPKRITGLCKRQQKKIGKMVSMAQKAGLM 433
+ILS+FV G + P+ TGL + Q+ + + + A+ AG+M
Sbjct: 114 VILSRFVTELGRIKPRGDTGLTAKNQRLLSRAIRRARAAGIM 155
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 29.1 bits (62), Expect = 0.57
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 421 FLRHRNHFSNLFLLSFTQARDALR*HATVRSYKLTQDKYISM 296
F ++RNHF NL T+A D H + +Q K++S+
Sbjct: 1016 FTKYRNHFGNLMTSEETKAPDNNDLHKRLSDVINSQQKFLSL 1057
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 71 VISTTNQLNIKEIRERTEGTNLVIEGVTLPSPRTELLVRPPNVTPPLP 214
V++TT+ ++ +TE N I ++LP + V N++ P
Sbjct: 2079 VVTTTSAYENEKFSSKTEWRNRAISSISLPLRTKNIYVNSDNISETFP 2126
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 291 TSNP--NAHI*HGGFSEDGSLVNERSIFGNGGVTFGGLTSSSVRGEGSVT 148
TSNP NA G +E + + S+ GNGGVT SS++ G S++
Sbjct: 814 TSNPINNATANTSGMTEKAA-GHRDSVIGNGGVTGANSMSSTLGGLSSMS 862
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 188 PPNVTPPLP--NIDLSLTKLPSSEKPP 262
PP++ PPLP NI S T P + PP
Sbjct: 966 PPSIPPPLPVSNILSSPTSEPPKDHPP 992
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 101 KEIRERTEGTNLVIEGVTLPSPRTELLVRPPNVTPPLPNIDLSLTKLPSSEK 256
K +RE T+ + ++ G+ PS T L P +PN D S+T E+
Sbjct: 1559 KALREITKERDRLLHGLQGPSVPTSPLKAPTASQLIIPNFDGSITNYSGEEE 1610
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 19 KVRILFSKKINF--IHHYSSYINYKPIKH*RD 108
+VR + K I+F IH+Y+S+ N P+ H RD
Sbjct: 311 QVRGIRLKWISFYSIHNYTSFTNEMPLTHNRD 342
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +2
Query: 131 NLVIEGVTLPSPRTELLVRPPNVTPPLPNIDLSLTKLPSSEKPPCYMCALGLDVKHTDVL 310
N+ E +P+ E + VT P N D + PSS+ P + A ++H D
Sbjct: 17 NMEQEDDQVPAVAAETVPLKRYVTNPGANRDEEVAAAPSSQDTPYFDYAYERSLRHQDAK 76
Query: 311 ILS 319
L+
Sbjct: 77 FLA 79
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 386 KKIGKMVSMAQKAGLMINLTPSNSKKDPTKRKE 484
K+ K + + +A M+NL S +++ PT KE
Sbjct: 171 KEANKDIPSSAEADTMLNLESSENREQPTSLKE 203
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 158 PSPRTELLVRPPNVTPPLPNI 220
P+P++EL RPP PP P+I
Sbjct: 131 PTPQSEL--RPPTSAPPRPSI 149
>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +2
Query: 2 NMAGLVRLGYSLAKKSILSTTTRVISTTNQLNIKEIRERTEGTNLV 139
N L ++ S + +ILS T +IS+ +++++ +RT+ TN++
Sbjct: 77 NFISLGKIRSSKRRNAILSYQT-IISSFPHNHVQKLFQRTQSTNMI 121
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 116 RTEGTNLVIEGVTLPSPRTELLVRPPNVTPPLPNID 223
R +NL G+ LPSP + PN P P+I+
Sbjct: 552 RGRASNLGDVGLRLPSPSPRIHTIVPNSAPEHPSIN 587
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 218 IDLSLTKLPSSEKPPCY 268
I+LSL ++P S +PP Y
Sbjct: 269 IELSLKEMPQSREPPSY 285
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.0 bits (52), Expect = 9.3
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -3
Query: 312 ISTSVCFTSN-PNAHI*HGGFSEDGSLVNERSIFGNGGVTFGGLTSSSVRGEGSVTPSIT 136
IS SV N PN+ GF E S+VN S GV +S+ E T S+T
Sbjct: 273 ISNSVFIEQNGPNSDT-VSGFKETSSIVNSSSTTEKPGVALDSQNDTSIFNE-EQTNSLT 330
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 149 VTLPSPRTELLVRPPNVTPPLPNIDLSLTKLPSSEKPPCYM 271
V+ P P + + + P +P P + S PSS P M
Sbjct: 312 VSTPVPMSPISISPAKPSPQSPKLSQSAVGHPSSSIPAAAM 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,746
Number of Sequences: 5004
Number of extensions: 55106
Number of successful extensions: 187
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -