Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28m09
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485... 33 0.19
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537... 31 0.78
03_06_0297 - 32924162-32924605 31 1.0
12_02_0423 + 18944555-18945226,18945309-18945545 29 2.4
07_01_0976 + 8226194-8226473,8227116-8227291,8227366-8227486,822... 29 3.2
10_08_0794 - 20624517-20624666,20624977-20625082,20625305-206254... 28 5.5
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501... 28 5.5
07_01_0463 + 3502708-3503535 28 5.5
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 28 5.5
12_02_1174 - 26696869-26698191 28 7.3
11_03_0171 + 11111534-11113207 28 7.3
10_08_0530 + 18568034-18568160,18568716-18569011,18569380-185694... 28 7.3
03_01_0528 + 3966687-3967643 28 7.3
03_01_0512 - 3849275-3849333,3849429-3849531,3849610-3849654,384... 28 7.3
01_01_0884 - 6956337-6956431,6956514-6957651 28 7.3
11_06_0693 - 26334574-26336121 27 9.7
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 27 9.7
08_02_0259 - 14974526-14974572,14974670-14974742,14974829-149748... 27 9.7
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 27 9.7
06_01_0978 + 7595641-7595843,7595952-7596072,7596176-7596253,759... 27 9.7
05_04_0174 - 18728199-18731411 27 9.7
>03_03_0206 +
15447054-15447181,15448243-15448298,15448373-15448515,
15448630-15448827,15448901-15449100,15449585-15449684,
15449769-15450350,15450434-15450556,15451028-15451108,
15451188-15451495,15451577-15451816,15452261-15452345,
15452429-15452606,15453053-15453227,15453826-15453982
Length = 917
Score = 33.1 bits (72), Expect = 0.19
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 131 NLVIEGVTLPSPRTELL-VRPPNVTPPLPNIDLSLTKLPSSEKPPCYMCALGLDVKHTDV 307
N++IEG T P T+ + V N + ID S + P C + L LDV D+
Sbjct: 770 NILIEGTTEPGTSTDCIAVEDLNKMDAIHIIDFSDLSIGD---PLCDLIPLHLDVFRGDI 826
Query: 308 LILSQFVRS 334
+L QF+RS
Sbjct: 827 DLLRQFLRS 835
>02_05_0356 +
28252154-28252897,28253171-28253377,28253473-28253710,
28254853-28255220
Length = 518
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 206 PLPNIDLSLTKLPSSEKPP--CYMCALGLDVKHTDVLIL 316
P P +D SL LP + PP Y+ L L V +D+L+L
Sbjct: 80 PAPLVDASLVSLPVPDAPPSFAYLLYLRLTVAFSDLLLL 118
>03_06_0297 - 32924162-32924605
Length = 147
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 200 TPP--LPNIDLSLTKLPSSEKPPCYMCALGLDV 292
TPP +P D SL +LPS + PP + GLDV
Sbjct: 46 TPPAEVPGTDRSLEELPSIDTPPEFEAPPGLDV 78
>12_02_0423 + 18944555-18945226,18945309-18945545
Length = 302
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 101 KEIRER---TEGTNLVIEGVTLPSPRTELLVRPPNVTPPLPNI 220
K RER +G + G LP+P TEL+ R PPLP +
Sbjct: 71 KRPRERGVVADGRSFRRAGAALPAPPTELVTRFVPTPPPLPPV 113
>07_01_0976 +
8226194-8226473,8227116-8227291,8227366-8227486,
8228684-8228757,8229269-8229332,8229969-8230039,
8230279-8230368,8230491-8230661,8231668-8231739
Length = 372
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 188 PPNVTPPLPNIDLSLTKLPSSEKPPCYMCA 277
P +PPLP +L +LP+S PP CA
Sbjct: 14 PVRRSPPLPATPRALLRLPASSFPPWSNCA 43
>10_08_0794 -
20624517-20624666,20624977-20625082,20625305-20625400,
20625577-20625623,20625751-20626029,20626160-20626248,
20626348-20626440,20626593-20626688,20627167-20627274,
20627410-20627728
Length = 460
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 213 GNGGVTFGGLTSSSVRGEGSVTPSI 139
G V F GLT +VRG G + PSI
Sbjct: 413 GGWSVVFDGLTFVTVRGAGHMVPSI 437
>08_02_0758 +
20848078-20849579,20849660-20849850,20849944-20850179,
20850254-20850973
Length = 882
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 407 SMAQKAGLMINLTPSNSKKDPTKRKEYKKFNTYF 508
S KA +N TPS+ PT+R+EY T F
Sbjct: 712 SKGLKALEKLNETPSSCHDTPTEREEYSSMGTEF 745
>07_01_0463 + 3502708-3503535
Length = 275
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 452 NSKKDPTKRKEYKKFNTYFDETTIFKKREMRWTERFKFRANAK 580
+SKKD +K KK + + DE KK+E E+ K +++ K
Sbjct: 78 DSKKDKENKKSDKKDDEHDDEDEEGKKKEKEMKEKKKDKSDKK 120
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = -3
Query: 315 RISTSVCFTSNPNAHI*HGGFSEDGSL----VNERSIFGNGGVTFGGLTSSSVRGEGSVT 148
+ +T V NP+ + G F DG V E FG G GG S +++G G +
Sbjct: 218 KFNTGVHHALNPDPY--RGAFGSDGEKYARDVQEIIDFGTTG-RVGGFISEAIQGVGGIV 274
Query: 147 PSITRFVPSVRSRI 106
++P+V + +
Sbjct: 275 ELAPGYLPAVYNMV 288
>12_02_1174 - 26696869-26698191
Length = 440
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 158 PSPRTELLVRPPNVTPPL-PNIDLSLTKLPSSEKPP 262
P PRT V PP+ PP+ P SL P PP
Sbjct: 127 PPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPP 162
>11_03_0171 + 11111534-11113207
Length = 557
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 238 FGQREIYIRQRWGDIWRSYQQ 176
FG+RE Y ++W +W Y +
Sbjct: 535 FGKRETYFLKKWSKLWLDYNK 555
>10_08_0530 +
18568034-18568160,18568716-18569011,18569380-18569475,
18570107-18570166,18570711-18570956
Length = 274
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +2
Query: 221 DLSLTKLPSSEKPPC--YMCALGLDVKHTD---VLILSQFVRSDGCMLPKRITGLCKRQQ 385
DL LT+ +++ PP + +K D V L+ F+ G ++ + T + + Q
Sbjct: 142 DLDLTRPAAAKNPPRPQFQTTTEEVLKKADFRNVRFLANFLTEAGIIIKRSQTRISAKAQ 201
Query: 386 KKIGKMVSMAQKAGLM 433
+K+ + + A+ GL+
Sbjct: 202 RKVAREIKTARALGLL 217
>03_01_0528 + 3966687-3967643
Length = 318
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = +2
Query: 71 VISTTNQLNIKEIRERTEGTNLVIEGVTLPSPRTELLVRPPNVTPPLPNIDLSLT---KL 241
+++ Q N+ I +R + T P PRT PP PPLP T +
Sbjct: 122 LLNLNAQHNVHVIHQRLQELKNSSSSPTKPPPRTPTRANPP--PPPLPTSSPCSTVTNSV 179
Query: 242 PSSEKPPCYMCALGLD 289
S+ PP C L+
Sbjct: 180 GSAALPPPMSCFQALE 195
>03_01_0512 -
3849275-3849333,3849429-3849531,3849610-3849654,
3849876-3849974,3850078-3850146,3850251-3850310,
3850540-3850633,3850875-3850949,3851101-3851219,
3851433-3851600,3852743-3852928
Length = 358
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 374 KRQQKKIGKMVSMAQKAGLMINLTPSNSKKDPTKRKEYKKFNTYFDETT 520
KR K+ KMV +A+ G M ++ N + DP + +F E T
Sbjct: 54 KRDVKREHKMVDLAKSIGEMKSILYGNGEADPVDEACSQLTKEFFKENT 102
>01_01_0884 - 6956337-6956431,6956514-6957651
Length = 410
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/93 (20%), Positives = 39/93 (41%)
Frame = +2
Query: 206 PLPNIDLSLTKLPSSEKPPCYMCALGLDVKHTDVLILSQFVRSDGCMLPKRITGLCKRQQ 385
P P+ S + P+ +PP A + ++++ VR+ +P + +CKR
Sbjct: 263 PDPSPSPSPSPSPAPTQPPTAAAAAAVAPAPPQPVVVACGVRAPRASVPAGLKQVCKRLG 322
Query: 386 KKIGKMVSMAQKAGLMINLTPSNSKKDPTKRKE 484
K ++A + PS + + P +R +
Sbjct: 323 KSRSASSAVAAAPSPSLPPPPSTAGQQPQRRDD 355
>11_06_0693 - 26334574-26336121
Length = 515
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 158 PSPRTELL-VRPPNVTPPLPNIDLSLTKLPSSEKP 259
P P LL + PP+ PPLP ++ ++ L +S P
Sbjct: 77 PPPALPLLRLVPPHAPPPLPLLNAAIKALSASSPP 111
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 255 FSEDGSLVNERSIFGNGGVTFGGLTSSSVRGEGSVTPSITRFVPSVRSRI 106
+S S+ + FG GG + GG S++ GS + S+ VPS S +
Sbjct: 46 YSTASSVSSSSHFFGGGGGSGGGSRSTTPGRRGSSSSSLVGPVPSPPSPV 95
>08_02_0259 -
14974526-14974572,14974670-14974742,14974829-14974891,
14975030-14975097,14975172-14975295,14976434-14976493,
14976744-14976806,14976902-14977942,14978027-14978093,
14978188-14978303,14978454-14978540,14978749-14978838,
14979128-14979214,14979366-14979428,14979509-14979566,
14980174-14980231,14980349-14980416,14980508-14980587,
14981084-14981147,14981321-14981392,14981517-14981576,
14982344-14982398,14982487-14982520,14983845-14983931,
14984036-14984122,14984211-14984408,14984509-14984639,
14984739-14984838
Length = 1066
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 459 LELDGVKLIIRPAFCAIETIFP 394
L +DG+K ++ P FC I++ P
Sbjct: 698 LTIDGIKYVVDPGFCKIKSYNP 719
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 164 PRTELLVRPPNVTP-PLPNIDLSLTKLPSSEKPP 262
P+ E+ P +V P P+P+ L +LP+ PP
Sbjct: 397 PQEEMATHPLSVPPQPVPSAQFPLNQLPAGVYPP 430
>06_01_0978 +
7595641-7595843,7595952-7596072,7596176-7596253,
7596371-7596436,7596556-7596688,7596774-7596841,
7596930-7597002,7597097-7597158,7597240-7597633,
7597768-7597832
Length = 420
Score = 27.5 bits (58), Expect = 9.7
Identities = 27/83 (32%), Positives = 38/83 (45%)
Frame = +2
Query: 2 NMAGLVRLGYSLAKKSILSTTTRVISTTNQLNIKEIRERTEGTNLVIEGVTLPSPRTELL 181
NM VR Y +A ++LS+ +I T Q + ++ R G EGVT+ P T+ L
Sbjct: 245 NMRTKVRRLYDIA--NVLSSLN-LIEKTQQADSRKPAFRWLGQAKRNEGVTVALPPTKTL 301
Query: 182 VRPPNVTPPLPNIDLSLTKLPSS 250
L NID KL S+
Sbjct: 302 PNKRAFGTDLTNIDNKRGKLDST 324
>05_04_0174 - 18728199-18731411
Length = 1070
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 459 LELDGVKLIIRPAFCAIETIFP-IFFCCLLHKPVMRFGSMQ 340
L +DG+K ++ P FC +++ P LL PV R + Q
Sbjct: 689 LTIDGIKYVVDPGFCKVKSYNPRTGMESLLVAPVSRASAEQ 729
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,035,187
Number of Sequences: 37544
Number of extensions: 350143
Number of successful extensions: 1224
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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