Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28m09
(644 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 23 2.5
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 23 3.3
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 3.3
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 3.3
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 3.3
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 22 4.4
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 22 5.8
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 5.8
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 22 5.8
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 21 7.7
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 21 7.7
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 21 7.7
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 21 7.7
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 21 7.7
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 7.7
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 23.0 bits (47), Expect = 2.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 158 PSPRTELLVRPPNVTPPLPNIDLSLT 235
P P E +P ++PPL N D + T
Sbjct: 184 PDPHDETAKKPRVLSPPLNNNDATPT 209
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 22.6 bits (46), Expect = 3.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 455 SKKDPTKRKEYKKFNTYFDETTIFKKREMRWTERFKFR 568
S+ ++K YK N+Y +K+R TER + R
Sbjct: 40 SRSREREQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 3.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 455 SKKDPTKRKEYKKFNTYFDETTIFKKREMRWTERFKFR 568
S+ ++K YK N+Y +K+R TER + R
Sbjct: 40 SRSREREQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 3.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 455 SKKDPTKRKEYKKFNTYFDETTIFKKREMRWTERFKFR 568
S+ ++K YK N+Y +K+R TER + R
Sbjct: 40 SRSREREQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 3.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 455 SKKDPTKRKEYKKFNTYFDETTIFKKREMRWTERFKFR 568
S+ ++K YK N+Y +K+R TER + R
Sbjct: 40 SRSREREQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 22.2 bits (45), Expect = 4.4
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 455 SKKDPTKRKEYKKFNTY--FDETTIFKKREMRWTERFKFRANAK*FY*IYNY 604
S+ ++K YK N+Y + ET+ + R+ ER K R YNY
Sbjct: 273 SRSREREQKSYKNENSYRKYRETSKERSRDRTERERSKERKIISSLSNNYNY 324
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 5.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 378 LLH--KPVMRFGSMQPSDLTN*LRISTSVCF 292
L+H K + + M PSD+ RI VCF
Sbjct: 386 LIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 416
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 5.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 378 LLH--KPVMRFGSMQPSDLTN*LRISTSVCF 292
L+H K + + M PSD+ RI VCF
Sbjct: 386 LIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 416
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.8 bits (44), Expect = 5.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 378 LLH--KPVMRFGSMQPSDLTN*LRISTSVCF 292
L+H K + + M PSD+ RI VCF
Sbjct: 324 LIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 354
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 7.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 455 SKKDPTKRKEYKKFNTYFDETTIFKKREMRWTERFKFR 568
S+ ++K YK N+Y K+R TER + R
Sbjct: 40 SRSREREQKSYKNENSYRKYRETSKERSRDRTERERSR 77
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 7.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 455 SKKDPTKRKEYKKFNTYFDETTIFKKREMRWTERFKFR 568
S+ ++K YK N+Y K+R TER + R
Sbjct: 262 SRSREREQKSYKNENSYRKYRETSKERSRDRTERERSR 299
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 7.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 455 SKKDPTKRKEYKKFNTYFDETTIFKKREMRWTERFKFR 568
S+ ++K YK N+Y K+R TER + R
Sbjct: 273 SRSREREQKSYKNENSYRKYRETSKERSRDRTERERSR 310
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 7.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 455 SKKDPTKRKEYKKFNTYFDETTIFKKREMRWTERFKFR 568
S+ ++K YK N+Y K+R TER + R
Sbjct: 273 SRSREREQKSYKNENSYRKYRETSKERSRDRTERERSR 310
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 7.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 455 SKKDPTKRKEYKKFNTYFDETTIFKKREMRWTERFKFR 568
S+ ++K YK N+Y K+R TER + R
Sbjct: 262 SRSREREQKSYKNENSYRKYRETSKERSRDRTERERSR 299
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.4 bits (43), Expect = 7.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 455 SKKDPTKRKEYKKFNTY--FDETTIFKKREMRWTERFKFR 568
S+ ++K YK N+Y + ET+ + R+ ER K R
Sbjct: 278 SRSREREQKSYKNENSYRKYRETSKERSRDKTERERSKER 317
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,550
Number of Sequences: 438
Number of extensions: 3921
Number of successful extensions: 25
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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