Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28m07
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.14
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 29 0.32
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 28 0.99
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 26 3.0
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 26 3.0
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 26 3.0
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 4.0
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 5.3
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 5.3
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 7.0
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 7.0
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 9.2
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.2
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.2
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 25 9.2
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 9.2
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 30.7 bits (66), Expect = 0.14
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 13 KNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKH 171
+ND + F+ L LNE+++++N+L+ A A +T NG + I H
Sbjct: 733 RNDTLSLFQN-SLYLNEVESRINILEQAGMYPIAYLTAKSNGLEEKAQQILSH 784
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.32
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 249 KMSLLAQNKSE-FDAVVDAFRKYGQMLVFGNVARKR 145
K +LL + KS+ FD V+AF KYG+ F V R +
Sbjct: 2 KTALLLKTKSQPFDPYVEAFEKYGRDTAFIPVLRHK 37
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 0.99
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 322 AIQCINEKLYDKHYKIRKIAKRVI 393
A++CIN+K +D+H KI+K+ V+
Sbjct: 57 ALKCINKKKHDEH-KIKKLRNEVL 79
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 483 KYILITIIHVFILQYFLYNLF 421
+Y+L+ II + L YF+YN F
Sbjct: 5 EYVLLVIILILSLCYFIYNNF 25
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 447 LQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFF 340
L F LF + T+HV F + F F+ +FF
Sbjct: 246 LAAFYRGLFPSLFGTLHVGIQFPLYEYFKSFLDDFF 281
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 522 FTIKLFYILFIRNKYILITIIHVFILQYFLYNLFNYIMSTI 400
F I LFY LF + + + TII +L F + I S I
Sbjct: 148 FVISLFYSLFHAHPFRINTIIPALVLPIFPCMICGVIASAI 188
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 507 FYILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVD 391
F ++FI +YI I I V +L + LFN +S + D
Sbjct: 1432 FKLVFIEMQYINIISIIVLVLTSLAWFLFNIFISEHYPD 1470
>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 144
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 295 DGVHPNPLLAIQCINEKLYD 354
D ++PN L ++ INEK +D
Sbjct: 5 DAINPNNLKILEVINEKCFD 24
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 5.3
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 85 LQSAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFSERID--DRIKLAF 225
+ +A LK+ I ESK P D+T+ Q +F + I R+ LA+
Sbjct: 41 VNTASALKSVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAY 89
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = -2
Query: 465 IIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVHTVI 292
+I + I ++Y F YI + IH + +F F+ F + +W H+++
Sbjct: 281 VISLIIAPLWIYFTFKYITTCIHANIDIVHFYLETPFLAGIFSSIF---FWVWCHSLL 335
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 194 NASTTASNSLLFWAKSDIFASEKCALKTT 280
+A T AS S W K FAS KC T
Sbjct: 663 SAVTKASTSYKVWKKKLNFASRKCVKSFT 691
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 24.6 bits (51), Expect = 9.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 426 LFNYIMSTIHVDYTF 382
LFNY++S IH D ++
Sbjct: 527 LFNYVLSLIHFDMSY 541
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 136 GTVTFPRDITKHQHLAIFSERI 201
GT + R++T +HL IF ER+
Sbjct: 357 GTKSLLRNLTNAKHLRIFCERL 378
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +1
Query: 58 NELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKLAFV 228
N+ DA+ N + + T K+ V + I H+H + E D LA V
Sbjct: 69 NDFDARFNKARLLLNMATNCDMLYKDSQVCLQKSIEMHKHALLLQEAPDIWFNLAQV 125
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 247 FRKRKMRFEDDMEVLYDGVHPNPL 318
FRKR++ +D ++L D VH N +
Sbjct: 119 FRKRELFTLEDEKILIDHVHKNDI 142
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 9.2
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -2
Query: 438 FLYNLFNYIMSTIHVDYTFSYFSNFVMFI 352
F+ + N+ +I+ +Y+F F+N +M +
Sbjct: 437 FILDSQNFFFESINTEYSFIIFTNLLMHL 465
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,758
Number of Sequences: 5004
Number of extensions: 43240
Number of successful extensions: 146
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -