Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28m07
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0227 + 6576333-6577769 29 2.3
04_01_0374 + 4914864-4914947,4915094-4915217,4921146-4921471,492... 28 4.0
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938... 28 4.0
02_01_0731 - 5471795-5471811,5471953-5472035,5472235-5472331,547... 28 4.0
12_01_0121 - 920988-921296,921556-921620,921874-921923,922009-92... 28 5.3
09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852 28 5.3
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 28 5.3
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 28 5.3
06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676 28 5.3
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 27 7.1
09_02_0051 - 3606453-3606473,3606562-3606957,3608250-3608419,360... 27 9.3
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 27 9.3
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690... 27 9.3
>03_02_0227 + 6576333-6577769
Length = 478
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = +1
Query: 142 VTFPRDITKHQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHPNPLL 321
V PR + F + DR+ ++ GQ+++F R R+ V+ V P P +
Sbjct: 5 VPLPRRPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERY--GSTVVRINVPPGPFM 62
Query: 322 A-----IQCINEKLYDKHYKIRKIAKR 387
A + ++ K + + + K+ KR
Sbjct: 63 ARDPRVVALLDAKSFPVLFDVAKVEKR 89
>04_01_0374 +
4914864-4914947,4915094-4915217,4921146-4921471,
4921527-4921658,4921824-4922362,4922445-4922597,
4922695-4922995
Length = 552
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 265 RFEDDM--EVLYDGVHPNPLLAIQCINE-KLYDKHYKIRKIAKRVIDVDCTHNVVKEVIQ 435
R EDD+ + L HP I C N Y Y+ RK++K D + EVIQ
Sbjct: 47 RREDDILTKALGTKGHPGRTRGIGCYNGLPQYSSQYRKRKVSKEERDACLKAELKVEVIQ 106
Query: 436 EV 441
E+
Sbjct: 107 EL 108
>02_05_0483 -
29391929-29392256,29393048-29393148,29393640-29393834,
29394124-29394240,29394376-29394447,29394840-29394950,
29395029-29395127,29395991-29396047,29396607-29397008,
29397249-29397303,29397725-29397809,29398023-29398130,
29398229-29398295,29398717-29398875,29399277-29399405
Length = 694
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -2
Query: 426 LFNYIMSTIHVDYTFSYFSNFVMFIVEF-FVNTLNCQQGIWVHTVIEHFHVVFKAHFSLA 250
L NY ++Y F + + F EF F + + +W H EHFH+
Sbjct: 561 LHNYFRKNDCLNYFFCFRWVLIQFKREFSFDQIMLLWEVLWTHYWSEHFHLYLCVAILKR 620
Query: 249 KMSLLAQNKSEFDAVV 202
S + + +FD ++
Sbjct: 621 YRSRIIGEQMDFDTLL 636
>02_01_0731 -
5471795-5471811,5471953-5472035,5472235-5472331,
5472460-5472652,5472782-5472849,5473345-5473639
Length = 250
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 102 FFGRLQHVKFGVEFVQTQFKLLKPVAHIVLER 7
FFG L H+K +E FKLL ++ LER
Sbjct: 27 FFGSLSHLKNDLECYLISFKLLPKYRNLHLER 58
>12_01_0121 -
920988-921296,921556-921620,921874-921923,922009-922106,
923832-923867,925351-925731,925839-926324,926471-926647
Length = 533
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -3
Query: 233 PKTKASLMRSSMRSE-NMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSS 60
PK + ++ + S++ + CW M RGN +P +L+ MA N + C+ ++L +S
Sbjct: 71 PKLRPAIQKDSVKQFFQVYNCWSGFMGRGNFLLPDILT-NMANEN-ALRCARVALQGTS 127
>09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852
Length = 506
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/95 (22%), Positives = 48/95 (50%)
Frame = +1
Query: 10 FKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHLAIF 189
F+NDV E+FE+R +E+ K+ + ++ + ++ + + T + +++ F
Sbjct: 393 FRNDVE---EKFEMRNHEMQLKIRAWEKTQQFRIEMMADKRAAKKTKALQDMEERYIQDF 449
Query: 190 SERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLY 294
I D++ + Q+ +F+K K+ DD+ + Y
Sbjct: 450 M-NIVDKLDVPEYF-QQAYFQKFKV--PDDIRLRY 480
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 27.9 bits (59), Expect = 5.3
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Frame = -2
Query: 354 IVEFFVNTLNC---QQGIWVHTVIEHFHVVFKAH--FSLAKMSLLAQNKSEFDAVVDAFR 190
+ EF ++TL + +++ EHF+VV+K H F + + + +N VD+
Sbjct: 349 VTEFGLHTLKAATPDRKLFIFFQNEHFNVVYKYHGRFFVLESDVGFRNYQNIWRSVDSPG 408
Query: 189 KYGQMLVFGNVARKRHRAIFAFRY-DGGFQFFGRLQH 82
+ G ++ ++R +H + + Y +G Q F + H
Sbjct: 409 ESGVLVHDITISRDQHSVLKSGNYFEGAKQSFKKKPH 445
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 27.9 bits (59), Expect = 5.3
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Frame = -2
Query: 354 IVEFFVNTLNC---QQGIWVHTVIEHFHVVFKAH--FSLAKMSLLAQNKSEFDAVVDAFR 190
+ EF ++TL + +++ EHF+VV+K H F + + + +N VD+
Sbjct: 349 VTEFGLHTLKAATPDRKLFIFFQNEHFNVVYKYHGRFFVLESDVGFRNYQNIWRSVDSPG 408
Query: 189 KYGQMLVFGNVARKRHRAIFAFRY-DGGFQFFGRLQH 82
+ G ++ ++R +H + + Y +G Q F + H
Sbjct: 409 ESGVLVHDITISRDQHSVLKSGNYFEGAKQSFKKKPH 445
>06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676
Length = 964
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 79 NMLQSAEKLKTA-IVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKL 219
+M KL+ +VT + + T +FP I K +HL S + + +KL
Sbjct: 619 DMFTRLRKLRVLHLVTATTSNTFSFPASIEKLKHLRYLSLQTGEAVKL 666
>10_08_0789 +
20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 70 AKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIK 216
AK N SA+KL T++ E + KH +FSE++ RIK
Sbjct: 550 AKHNCQPSAKKLLTSLFFEKAGFLLICLATFRKHFPKNMFSEQVSKRIK 598
>09_02_0051 -
3606453-3606473,3606562-3606957,3608250-3608419,
3609654-3610707
Length = 546
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 322 AIQCINEKLYDKHYKIRKIAKRVIDVD 402
AI+CI E D+ Y I + KRVI ++
Sbjct: 422 AIKCIEEHKLDEKYPIDLLQKRVIQLE 448
>07_03_1772 +
29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 170 CLVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSSFKRNSNCSNLL 27
C+ + GN+ V F+ S + N DC L ++ S+CSN+L
Sbjct: 576 CIRIRNGNLFVKFIYSGSTVEHNVDGDCLRLRSRRATC---SDCSNVL 620
>04_01_0526 -
6901003-6901056,6901070-6901404,6901423-6901607,
6902201-6904641
Length = 1004
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -3
Query: 194 SENMAKCWC--LVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSSFKRN 48
+++ + CW L +S GN+ +V + V + ++ SM+S +S+ +KRN
Sbjct: 407 NQSTSTCWKKKLPLSNGNMADYVQRTVLLKVPSSNSSQSMISTSSNKWKRN 457
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,694,361
Number of Sequences: 37544
Number of extensions: 256614
Number of successful extensions: 823
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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