Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28m07
(529 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58749-2|AAK18876.1| 355|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 31 0.51
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z81533-13|CAB04336.2| 323|Caenorhabditis elegans Hypothetical p... 30 1.2
AL023835-6|CAA19483.1| 144|Caenorhabditis elegans Hypothetical ... 30 1.2
Z81545-8|CAB04444.1| 327|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical... 29 2.1
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali... 29 2.1
AF490976-1|AAQ06434.1| 157|Caenorhabditis elegans Y74C10AM.1b p... 29 2.7
AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein ... 29 2.7
Z81552-4|CAB04488.2| 765|Caenorhabditis elegans Hypothetical pr... 28 3.6
U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain (p... 28 3.6
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 4.8
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 4.8
U40800-2|AAA81489.2| 137|Caenorhabditis elegans Hypothetical pr... 28 4.8
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 4.8
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 4.8
AF101316-4|AAC69229.2| 296|Caenorhabditis elegans Serpentine re... 28 4.8
AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in ... 27 6.3
Z82261-5|CAH60756.1| 304|Caenorhabditis elegans Hypothetical pr... 27 8.3
AF016419-1|AAG24051.1| 499|Caenorhabditis elegans Hypothetical ... 27 8.3
AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical ... 27 8.3
>U58749-2|AAK18876.1| 355|Caenorhabditis elegans Hypothetical
protein B0496.5 protein.
Length = 355
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = -2
Query: 480 YILITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVH 301
+++ +HV +L F + I+ + +SYF N+ +FI+ F +T QG WV
Sbjct: 88 FLITDYLHVLLLAAFAIDRLIQIIFPVSYGKFYSYFINWKLFILLIFASTGLSVQG-WVF 146
Query: 300 TVIEHFH 280
+ F+
Sbjct: 147 PLDSRFN 153
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 31.1 bits (67), Expect = 0.51
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 169 HQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEK 345
H HL+ + + KL + E F+ +++ F D + LYDG PL+A N+K
Sbjct: 626 HSHLSAYMLFLCTAEKLPWFGDAENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKK 685
Query: 346 LYDKHYKIRKIAKRVI 393
L + + + K++K +I
Sbjct: 686 LTYETF-MEKMSKYLI 700
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 31.1 bits (67), Expect = 0.51
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 169 HQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEK 345
H HL+ + + KL + E F+ +++ F D + LYDG PL+A N+K
Sbjct: 626 HSHLSAYMLFLCTAEKLPWFGDAENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKK 685
Query: 346 LYDKHYKIRKIAKRVI 393
L + + + K++K +I
Sbjct: 686 LTYETF-MEKMSKYLI 700
>Z81533-13|CAB04336.2| 323|Caenorhabditis elegans Hypothetical
protein F36G9.6 protein.
Length = 323
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -2
Query: 525 FFTIKLFYILFIRNKYILITIIHVF-ILQYFLYNLFNYIMST-IHVDYTFSYFSNFVMFI 352
FFT+ + + F+ YI T++ VF IL FL + ++ + T S+F + + FI
Sbjct: 23 FFTVPVL-LAFVPILYIPATVVVVFHILSKFLTEYYERNVNVQLFGVITLSHFMSLLFFI 81
Query: 351 VEFF 340
+FF
Sbjct: 82 ADFF 85
>AL023835-6|CAA19483.1| 144|Caenorhabditis elegans Hypothetical
protein Y37A1B.6 protein.
Length = 144
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = -2
Query: 459 HVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVN---TLNCQQGIWVHTVIE 289
+ F+L YF N+FN + IH TF ++F F++E + + N + ++ H+V
Sbjct: 23 YCFMLHYFGKNMFNSNFADIH--NTFLMVASFEQFVLEGYYSIDRASNFPENLYFHSVTG 80
Query: 288 HFHVVFKAH 262
+V K H
Sbjct: 81 --KIVHKPH 87
>Z81545-8|CAB04444.1| 327|Caenorhabditis elegans Hypothetical
protein F49H6.11 protein.
Length = 327
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -2
Query: 522 FTIKLFYILFIRNKYILITIIHVFILQYFLYNL-FNYIMSTIHVDYTFSYFSNF-VMFIV 349
FT+ L YIL I + + + + I+ Y Y ++++ S +Y Y NF V F++
Sbjct: 104 FTLFLIYILHILQQTFHLLLFSLAIMSYLKYQFPYDFLYSQ---NYISKYVRNFNVFFVL 160
Query: 348 EFFV 337
+ FV
Sbjct: 161 KDFV 164
>Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical
protein M01A8.2b protein.
Length = 869
Score = 29.1 bits (62), Expect = 2.1
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Frame = +1
Query: 1 DETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHL 180
+E + +GN EQ+E +++EL ML A K V + KN + + ++
Sbjct: 497 NEDNERKLGNISEQYEKKVSELGDLKKMLDEARKKFEEDVEQMKNSN----QQVIRNHAN 552
Query: 181 AIFSERIDDRIKLAFVLGQ-ERHFRKRKMRFEDDMEVLYDGVHPNPLLAIQCINEKL--Y 351
A+ S + ++A + ER+F + + R E ++ + + H + C++EK+
Sbjct: 553 AVESLQKTHETQIAEKNKEFERNFEEERARREAEVCAM-NNRHQK---VVACLDEKISEA 608
Query: 352 DKHYKIRKIAKRVIDV----DCTH 411
+K + + K+V+ DC H
Sbjct: 609 EKQCEQLNVDKKVLQAALANDCDH 632
>Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical
protein M01A8.2a protein.
Length = 937
Score = 29.1 bits (62), Expect = 2.1
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Frame = +1
Query: 1 DETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHL 180
+E + +GN EQ+E +++EL ML A K V + KN + + ++
Sbjct: 565 NEDNERKLGNISEQYEKKVSELGDLKKMLDEARKKFEEDVEQMKNSN----QQVIRNHAN 620
Query: 181 AIFSERIDDRIKLAFVLGQ-ERHFRKRKMRFEDDMEVLYDGVHPNPLLAIQCINEKL--Y 351
A+ S + ++A + ER+F + + R E ++ + + H + C++EK+
Sbjct: 621 AVESLQKTHETQIAEKNKEFERNFEEERARREAEVCAM-NNRHQK---VVACLDEKISEA 676
Query: 352 DKHYKIRKIAKRVIDV----DCTH 411
+K + + K+V+ DC H
Sbjct: 677 EKQCEQLNVDKKVLQAALANDCDH 700
>AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical
protein Y75B8A.34 protein.
Length = 344
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/44 (25%), Positives = 27/44 (61%)
Frame = -2
Query: 480 YILITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIV 349
YI+ ++ FI+ + F +I ++++DY+ ++FS + F++
Sbjct: 98 YIISSLASAFIIDSRTLSGFYFIQPSLYLDYSSNFFSVAITFLM 141
>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
pathway homologprotein 1 protein.
Length = 1451
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 190 SERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVL 291
S++ D +K+A+ +G+E ++R+ EDD E L
Sbjct: 182 SQKAKDEMKMAYQVGREEALQQRRNDLEDDEENL 215
>AF490976-1|AAQ06434.1| 157|Caenorhabditis elegans Y74C10AM.1b
protein protein.
Length = 157
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 236 WPKTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSA 93
WPK K + R + +A C + NV+VPFLL + +N A
Sbjct: 88 WPKDKPEIKRRVL----VALCLLIAAKLANVSVPFLLRDIVNYYNGKA 131
>AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein
protein.
Length = 703
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 236 WPKTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSA 93
WPK K + R + +A C + NV+VPFLL + +N A
Sbjct: 88 WPKDKPEIKRRVL----VALCLLIAAKLANVSVPFLLRDIVNYYNGKA 131
>Z81552-4|CAB04488.2| 765|Caenorhabditis elegans Hypothetical
protein F56G4.6 protein.
Length = 765
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 86 SMLSLASSSFKRNSNCSNLLPTSF 15
++L L S K NCS +LP SF
Sbjct: 109 TLLKLCKKSIKTTGNCSKILPISF 132
>U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 8 protein.
Length = 813
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -2
Query: 201 DAFRKYGQMLVFGNVARKRHRAIFAFRYDGGFQFFGRLQHVKFGVEFVQTQFKLLK 34
D F + + F + A +R R+ + F GGF F + K+ + + Q QFK+L+
Sbjct: 83 DRFGTFDDVKQFEDNA-ERARSFYGFGGFGGFGFDESVFEYKYRMSYQQYQFKILE 137
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -2
Query: 504 YILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTF 382
++ + + ++ ++ VFI +YN N + IH D F
Sbjct: 12 FVAYSAVTFSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -2
Query: 504 YILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTF 382
++ + + ++ ++ VFI +YN N + IH D F
Sbjct: 12 FVAYSAVTFSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>U40800-2|AAA81489.2| 137|Caenorhabditis elegans Hypothetical
protein D2096.5 protein.
Length = 137
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 462 IHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTL 328
+HV +L F++ LF+ + + + F+ F + + V+FFV L
Sbjct: 4 LHVSLLSVFIFLLFSSEVEALVTTFHFNGFLSCGLSTVDFFVQKL 48
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -2
Query: 504 YILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTF 382
++ + + ++ ++ VFI +YN N + IH D F
Sbjct: 12 FVAYSAVTFSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -2
Query: 504 YILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTF 382
++ + + ++ ++ VFI +YN N + IH D F
Sbjct: 12 FVAYSAVTFSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>AF101316-4|AAC69229.2| 296|Caenorhabditis elegans Serpentine
receptor, class sx protein8 protein.
Length = 296
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -2
Query: 516 IKLFYILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFI 352
+K I+FI + Y+ + +I+ FIL + + N ++ I + S+ F I
Sbjct: 204 LKFSAIIFIISNYLSVFVINAFILYGYAGDELNGVIGNISIFSMISFTHTFYTII 258
>AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 4 protein.
Length = 339
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 298 RHRALPCRLQSAFFACENVALGPKQKRV*CGRRCVPKIWPN 176
R A+ L S+F E A ++KR CG C P++ P+
Sbjct: 2 RFIAIAALLASSFLLIEATATSTREKRQSCG--CAPRVQPS 40
>Z82261-5|CAH60756.1| 304|Caenorhabditis elegans Hypothetical
protein C35D6.9a protein.
Length = 304
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -2
Query: 516 IKLFYILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTFS 379
I +F +F+ K ++I+ +F +N+F+ + + +HV FS
Sbjct: 152 IFIFVFIFVDAKEESNGFKTIYIVIFFTFNIFSILSAILHVPMYFS 197
>AF016419-1|AAG24051.1| 499|Caenorhabditis elegans Hypothetical
protein F07G11.4 protein.
Length = 499
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 319 LAIQCINEKLYDKHYKIRK 375
L ++C NEK YD +Y RK
Sbjct: 425 LVLKCYNEKYYDLYYSNRK 443
>AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical
protein T21G5.2 protein.
Length = 109
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 483 KYILITIIHVFILQYFLYNLFNYI-MSTIHVDYTFSYFSNF 364
++++ T IH+F L+N F +I +S V +FS F F
Sbjct: 35 QFVIFTYIHIFSYLCVLFNYFLFIDLSISTVIVSFSRFIKF 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,687,013
Number of Sequences: 27780
Number of extensions: 251530
Number of successful extensions: 916
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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