Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m07
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   3.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.9  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   5.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.8  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 40  QFELRLNELDAKLNMLQSAEKLKTAIVTESKN 135
           +F++ LN+ D  +++  S  K+    V  +KN
Sbjct: 76  KFDVYLNDTDMDMDLKDSIRKIIRQCVDNAKN 107


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/54 (20%), Positives = 25/54 (46%)
 Frame = -3

Query: 230 KTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLA 69
           K   + +RSS      A+C    ++   +++ F+      V NFS   +++ ++
Sbjct: 256 KMNVASLRSSENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNLVKIS 309


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/54 (20%), Positives = 25/54 (46%)
 Frame = -3

Query: 230 KTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLA 69
           K   + +RSS      A+C    ++   +++ F+      V NFS   +++ ++
Sbjct: 6   KMNVASLRSSENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNLVKIS 59


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 334 INEKLYDKH 360
           +N KLYDKH
Sbjct: 12  LNPKLYDKH 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,798
Number of Sequences: 438
Number of extensions: 3278
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)