Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m03
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   0.69 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   3.7  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.8  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 107 LHVSSYIRMPKSNVHPTSYEASDPASNNTTYDLQL 211
           L VS+      SNV   SY + D  S +T YD++L
Sbjct: 99  LEVSNNNFKTYSNVTTCSYYSLDDLSEDTFYDIRL 133


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 149 HPTSYEASDPASN 187
           HP +Y+ +DP +N
Sbjct: 439 HPNTYQIADPVTN 451


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 265 AFNMGVVLVSFIIFLTGNELEIIRCVIA 182
           +FN    L+ F++ L+GN    I  +I+
Sbjct: 74  SFNTFAKLLIFVVSLSGNSAVFIMLIIS 101


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,395
Number of Sequences: 336
Number of extensions: 3442
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)